Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

HomodimerDB
>protein (length=99)
MDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPV
YQHKITSLELGAVCGKPFPVAALLVLDEGLSNIMELVEK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3cpq-a1-m1-cB 101 99 1.0000 0.9802 1.0000 5.36e-68 3cpq-a1-m1-cA_3cpq-a1-m1-cB
2 3cpq-a1-m1-cA 99 99 1.0000 1.0000 1.0000 6.34e-68 3cpq-a1-m1-cA_3cpq-a1-m1-cB
3 3ra5-a1-m1-cB 97 96 0.4444 0.4536 0.4583 9.63e-28 3ra5-a1-m1-cA_3ra5-a1-m1-cB
4 3ra5-a1-m1-cA 97 96 0.4444 0.4536 0.4583 9.63e-28 3ra5-a1-m1-cA_3ra5-a1-m1-cB
5 3vi6-a2-m3-cA 97 93 0.3333 0.3402 0.3548 4.46e-19 3vi6-a2-m2-cA_3vi6-a2-m3-cA
6 3vi6-a2-m2-cA 97 93 0.3333 0.3402 0.3548 4.46e-19 3vi6-a2-m2-cA_3vi6-a2-m3-cA
7 6pf8-a3-m2-cE 506 33 0.1010 0.0198 0.3030 4.4 6pf8-a3-m1-cE_6pf8-a3-m2-cE
8 6pf8-a3-m1-cE 506 33 0.1010 0.0198 0.3030 4.4 6pf8-a3-m1-cE_6pf8-a3-m2-cE
9 6b8h-a1-m1-cp 249 32 0.1212 0.0482 0.3750 8.9 6b8h-a1-m1-ca_6b8h-a1-m1-cp
10 6b8h-a1-m1-ca 249 32 0.1212 0.0482 0.3750 8.9 6b8h-a1-m1-ca_6b8h-a1-m1-cp

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600