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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=77)
MDWEERKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGGV
TEKDREMARLTDALLQR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1usm-a1-m2-cA 77 77 1.0000 1.0000 1.0000 2.53e-52 1usm-a1-m1-cA_1usm-a1-m2-cA
2 1usm-a1-m1-cA 77 77 1.0000 1.0000 1.0000 2.53e-52 1usm-a1-m1-cA_1usm-a1-m2-cA
3 4wil-a1-m2-cA 100 68 0.3117 0.2400 0.3529 1.07e-11 4wil-a1-m2-cB_4wil-a1-m2-cA
4 4wil-a1-m1-cA 100 68 0.3117 0.2400 0.3529 1.07e-11 4wil-a1-m2-cB_4wil-a1-m1-cA
5 4wil-a1-m2-cB 98 68 0.3117 0.2449 0.3529 1.14e-11 4wil-a1-m1-cB_4wil-a1-m2-cB, 4wil-a1-m2-cB_4wil-a1-m1-cA, 4wil-a1-m2-cB_4wil-a1-m2-cA
6 4wil-a1-m1-cB 98 68 0.3117 0.2449 0.3529 1.14e-11 4wil-a1-m1-cB_4wil-a1-m2-cB
7 2ebb-a1-m2-cA 96 64 0.2468 0.1979 0.2969 3.41e-10 2ebb-a1-m1-cA_2ebb-a1-m2-cA
8 2ebb-a1-m1-cA 96 64 0.2468 0.1979 0.2969 3.41e-10 2ebb-a1-m1-cA_2ebb-a1-m2-cA
9 2v6t-a1-m2-cB 100 62 0.3247 0.2500 0.4032 3.97e-10 2v6t-a1-m1-cB_2v6t-a1-m2-cB
10 2v6t-a1-m1-cB 100 62 0.3247 0.2500 0.4032 3.97e-10 2v6t-a1-m1-cB_2v6t-a1-m2-cB
11 2v6u-a1-m2-cB 99 62 0.3247 0.2525 0.4032 4.05e-10 2v6u-a1-m2-cB_2v6u-a1-m1-cA, 2v6u-a1-m2-cB_2v6u-a1-m2-cA
12 2v6u-a1-m2-cA 103 62 0.3247 0.2427 0.4032 4.51e-10 2v6u-a1-m2-cB_2v6u-a1-m2-cA
13 2v6u-a1-m1-cA 103 62 0.3247 0.2427 0.4032 4.51e-10 2v6u-a1-m2-cB_2v6u-a1-m1-cA
14 4low-a1-m1-cA 84 76 0.2987 0.2738 0.3026 0.009 4low-a1-m1-cB_4low-a1-m1-cA
15 4low-a1-m1-cB 79 76 0.2987 0.2911 0.3026 0.011 4low-a1-m1-cB_4low-a1-m1-cA
16 5yo9-a1-m1-cA 371 47 0.1948 0.0404 0.3191 2.5 5yo9-a1-m1-cB_5yo9-a1-m1-cA
17 5yo9-a1-m1-cB 366 47 0.1948 0.0410 0.3191 2.6 5yo9-a1-m1-cB_5yo9-a1-m1-cA
18 1z85-a2-m2-cA 211 75 0.2857 0.1043 0.2933 3.4 1z85-a2-m2-cA_1z85-a2-m1-cB
19 1z85-a1-m1-cA 211 75 0.2857 0.1043 0.2933 3.4 1z85-a1-m1-cA_1z85-a1-m1-cB
20 2q4t-a1-m1-cB 283 34 0.1818 0.0495 0.4118 4.0 2q4t-a1-m1-cA_2q4t-a1-m1-cB
21 2q4t-a1-m1-cA 283 34 0.1818 0.0495 0.4118 4.0 2q4t-a1-m1-cA_2q4t-a1-m1-cB
22 6znx-a2-m1-cB 292 26 0.1818 0.0479 0.5385 4.0 6znx-a2-m2-cC_6znx-a2-m1-cB
23 6znx-a2-m2-cC 265 26 0.1818 0.0528 0.5385 4.4 6znx-a2-m2-cC_6znx-a2-m1-cB
24 4ft2-a1-m1-cA 674 31 0.1169 0.0134 0.2903 5.9 4ft2-a1-m1-cB_4ft2-a1-m1-cA
25 4ft2-a1-m1-cB 670 31 0.1169 0.0134 0.2903 6.0 4ft2-a1-m1-cB_4ft2-a1-m1-cA
26 4gbd-a1-m1-cB 434 37 0.1429 0.0253 0.2973 6.5 4gbd-a1-m1-cB_4gbd-a1-m1-cA
27 1kv3-a3-m1-cE 651 36 0.1688 0.0200 0.3611 6.7 1kv3-a3-m1-cD_1kv3-a3-m1-cE
28 1kv3-a3-m1-cD 651 36 0.1688 0.0200 0.3611 6.7 1kv3-a3-m1-cD_1kv3-a3-m1-cE
29 4gbd-a1-m1-cA 435 37 0.1429 0.0253 0.2973 6.8 4gbd-a1-m1-cB_4gbd-a1-m1-cA
30 1z85-a2-m1-cB 215 73 0.2597 0.0930 0.2740 9.0 1z85-a2-m2-cA_1z85-a2-m1-cB
31 1z85-a1-m1-cB 215 73 0.2597 0.0930 0.2740 9.0 1z85-a1-m1-cA_1z85-a1-m1-cB
32 5w4c-a1-m1-cB 338 21 0.1169 0.0266 0.4286 9.2 5w4c-a1-m1-cB_5w4c-a1-m1-cA
33 5w4c-a1-m1-cA 356 21 0.1169 0.0253 0.4286 9.3 5w4c-a1-m1-cB_5w4c-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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