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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
MEAKTMKDMQKEVDAYIGQFKEGYFSPLAMMARLTEEMGELAREVNHYYGEERSIEEELG
DVLFVMICMANSLNIDLETAHNIVMNKFNTRDKDR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5ie9-a1-m1-cC 95 95 1.0000 1.0000 1.0000 1.81e-67 5ie9-a1-m1-cD_5ie9-a1-m1-cC
2 5ie9-a1-m1-cB 94 95 0.9895 1.0000 0.9895 5.65e-65 5ie9-a1-m1-cD_5ie9-a1-m1-cB
3 5ie9-a1-m1-cA 94 95 0.9895 1.0000 0.9895 5.65e-65 5ie9-a1-m1-cD_5ie9-a1-m1-cA
4 5ie9-a1-m1-cD 92 95 0.9684 1.0000 0.9684 3.48e-63 5ie9-a1-m1-cD_5ie9-a1-m1-cA, 5ie9-a1-m1-cD_5ie9-a1-m1-cB, 5ie9-a1-m1-cD_5ie9-a1-m1-cC
5 2gta-a1-m1-cB 90 89 0.6737 0.7111 0.7191 1.10e-38 2gta-a1-m1-cC_2gta-a1-m1-cB
6 2gta-a1-m1-cA 92 91 0.6526 0.6739 0.6813 1.98e-36 2gta-a1-m1-cC_2gta-a1-m1-cA
7 2gta-a1-m1-cC 81 85 0.6421 0.7531 0.7176 2.07e-36 2gta-a1-m1-cC_2gta-a1-m1-cA, 2gta-a1-m1-cC_2gta-a1-m1-cB
8 2q9l-a1-m1-cB 90 96 0.3053 0.3222 0.3021 0.014 2q9l-a1-m1-cD_2q9l-a1-m1-cB
9 7mu5-a2-m1-cB 105 66 0.2105 0.1905 0.3030 0.015 7mu5-a2-m1-cH_7mu5-a2-m1-cB
10 7mu5-a2-m1-cH 104 66 0.2105 0.1923 0.3030 0.015 7mu5-a2-m1-cH_7mu5-a2-m1-cB, 7mu5-a2-m1-cH_7mu5-a2-m1-cF
11 2oig-a1-m1-cD 104 80 0.2421 0.2212 0.2875 0.015 2oig-a1-m1-cC_2oig-a1-m1-cD
12 1vmg-a2-m4-cA 80 77 0.2632 0.3125 0.3247 0.015 1vmg-a2-m1-cA_1vmg-a2-m4-cA, 1vmg-a2-m2-cA_1vmg-a2-m4-cA, 1vmg-a2-m3-cA_1vmg-a2-m4-cA
13 1vmg-a2-m3-cA 80 77 0.2632 0.3125 0.3247 0.015 1vmg-a2-m3-cA_1vmg-a2-m4-cA
14 1vmg-a2-m2-cA 80 77 0.2632 0.3125 0.3247 0.015 1vmg-a2-m2-cA_1vmg-a2-m4-cA
15 1vmg-a2-m1-cA 80 77 0.2632 0.3125 0.3247 0.015 1vmg-a2-m1-cA_1vmg-a2-m4-cA
16 2q9l-a1-m1-cD 78 64 0.2211 0.2692 0.3281 0.018 2q9l-a1-m1-cD_2q9l-a1-m1-cB
17 2oig-a1-m1-cC 90 73 0.2105 0.2222 0.2740 0.072 2oig-a1-m1-cC_2oig-a1-m1-cD
18 7mu5-a1-m1-cG 104 67 0.2105 0.1923 0.2985 0.075 7mu5-a1-m1-cG_7mu5-a1-m1-cA
19 7mu5-a2-m1-cF 106 67 0.2105 0.1887 0.2985 0.079 7mu5-a2-m1-cH_7mu5-a2-m1-cF
20 2q5z-a1-m2-cB 94 96 0.2947 0.2979 0.2917 0.26 2q5z-a1-m2-cA_2q5z-a1-m2-cB
21 7mu5-a1-m1-cA 110 79 0.2316 0.2000 0.2785 0.28 7mu5-a1-m1-cG_7mu5-a1-m1-cA
22 2q5z-a1-m2-cA 93 96 0.2947 0.3011 0.2917 0.29 2q5z-a1-m2-cA_2q5z-a1-m2-cB
23 6ed1-a2-m1-cC 860 52 0.1684 0.0186 0.3077 1.4 6ed1-a2-m1-cB_6ed1-a2-m1-cC
24 6ed1-a2-m1-cB 860 52 0.1684 0.0186 0.3077 1.4 6ed1-a2-m1-cB_6ed1-a2-m1-cC
25 1wdz-a1-m1-cA 231 74 0.2421 0.0996 0.3108 3.0 1wdz-a1-m1-cB_1wdz-a1-m1-cA
26 1wdz-a1-m1-cB 222 74 0.2421 0.1036 0.3108 3.2 1wdz-a1-m1-cB_1wdz-a1-m1-cA
27 3cdx-a1-m1-cD 322 63 0.2000 0.0590 0.3016 4.5 3cdx-a1-m1-cD_3cdx-a1-m1-cC
28 3cdx-a1-m1-cC 325 63 0.2000 0.0585 0.3016 4.5 3cdx-a1-m1-cC_3cdx-a1-m1-cF, 3cdx-a1-m1-cD_3cdx-a1-m1-cC
29 3cdx-a1-m1-cF 328 63 0.2000 0.0579 0.3016 4.5 3cdx-a1-m1-cC_3cdx-a1-m1-cF
30 3rde-a5-m1-cD 552 32 0.1158 0.0199 0.3438 6.5 3rde-a5-m1-cA_3rde-a5-m1-cD, 3rde-a5-m1-cB_3rde-a5-m1-cD, 3rde-a5-m1-cC_3rde-a5-m1-cD
31 3rde-a5-m1-cC 552 32 0.1158 0.0199 0.3438 6.5 3rde-a5-m1-cA_3rde-a5-m1-cC, 3rde-a5-m1-cC_3rde-a5-m1-cD
32 3rde-a5-m1-cB 552 32 0.1158 0.0199 0.3438 6.5 3rde-a5-m1-cB_3rde-a5-m1-cD
33 3rde-a5-m1-cA 552 32 0.1158 0.0199 0.3438 6.5 3rde-a5-m1-cA_3rde-a5-m1-cC, 3rde-a5-m1-cA_3rde-a5-m1-cD

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Reference:
Jacob Schwartz et al.

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