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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
MEAKTMKDMQKEVDAYIGQFKEGYFSPLAMMARLTEEMGELAREVNHYYGERSIEEELGD
VLFVMICMANSLNIDLETAHNIVMNKFNTRDKDR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5ie9-a1-m1-cB 94 94 1.0000 1.0000 1.0000 7.40e-67 5ie9-a1-m1-cD_5ie9-a1-m1-cB
2 5ie9-a1-m1-cA 94 94 1.0000 1.0000 1.0000 7.40e-67 5ie9-a1-m1-cD_5ie9-a1-m1-cA
3 5ie9-a1-m1-cC 95 95 1.0000 0.9895 0.9895 5.59e-65 5ie9-a1-m1-cD_5ie9-a1-m1-cC
4 5ie9-a1-m1-cD 92 94 0.9787 1.0000 0.9787 2.08e-63 5ie9-a1-m1-cD_5ie9-a1-m1-cA, 5ie9-a1-m1-cD_5ie9-a1-m1-cB, 5ie9-a1-m1-cD_5ie9-a1-m1-cC
5 2gta-a1-m1-cB 90 89 0.6809 0.7111 0.7191 3.58e-39 2gta-a1-m1-cC_2gta-a1-m1-cB
6 2gta-a1-m1-cA 92 91 0.6596 0.6739 0.6813 8.09e-37 2gta-a1-m1-cC_2gta-a1-m1-cA
7 2gta-a1-m1-cC 81 84 0.6489 0.7531 0.7262 1.23e-36 2gta-a1-m1-cC_2gta-a1-m1-cA, 2gta-a1-m1-cC_2gta-a1-m1-cB
8 1vmg-a2-m4-cA 80 76 0.2660 0.3125 0.3289 0.010 1vmg-a2-m1-cA_1vmg-a2-m4-cA, 1vmg-a2-m2-cA_1vmg-a2-m4-cA, 1vmg-a2-m3-cA_1vmg-a2-m4-cA
9 1vmg-a2-m3-cA 80 76 0.2660 0.3125 0.3289 0.010 1vmg-a2-m3-cA_1vmg-a2-m4-cA
10 1vmg-a2-m2-cA 80 76 0.2660 0.3125 0.3289 0.010 1vmg-a2-m2-cA_1vmg-a2-m4-cA
11 1vmg-a2-m1-cA 80 76 0.2660 0.3125 0.3289 0.010 1vmg-a2-m1-cA_1vmg-a2-m4-cA
12 2q9l-a1-m1-cB 90 96 0.3085 0.3222 0.3021 0.013 2q9l-a1-m1-cD_2q9l-a1-m1-cB
13 2q9l-a1-m1-cD 78 64 0.2234 0.2692 0.3281 0.018 2q9l-a1-m1-cD_2q9l-a1-m1-cB
14 7mu5-a2-m1-cB 105 66 0.2021 0.1810 0.2879 0.034 7mu5-a2-m1-cH_7mu5-a2-m1-cB
15 7mu5-a2-m1-cH 104 66 0.2021 0.1827 0.2879 0.036 7mu5-a2-m1-cH_7mu5-a2-m1-cB, 7mu5-a2-m1-cH_7mu5-a2-m1-cF
16 2oig-a1-m1-cD 104 81 0.2553 0.2308 0.2963 0.073 2oig-a1-m1-cC_2oig-a1-m1-cD
17 7mu5-a2-m1-cF 106 68 0.2128 0.1887 0.2941 0.14 7mu5-a2-m1-cH_7mu5-a2-m1-cF
18 7mu5-a1-m1-cG 104 68 0.2128 0.1923 0.2941 0.14 7mu5-a1-m1-cG_7mu5-a1-m1-cA
19 2q5z-a1-m2-cB 94 96 0.2979 0.2979 0.2917 0.25 2q5z-a1-m2-cA_2q5z-a1-m2-cB
20 2q5z-a1-m2-cA 93 96 0.2979 0.3011 0.2917 0.25 2q5z-a1-m2-cA_2q5z-a1-m2-cB
21 6ed1-a2-m1-cC 860 52 0.1809 0.0198 0.3269 0.38 6ed1-a2-m1-cB_6ed1-a2-m1-cC
22 6ed1-a2-m1-cB 860 52 0.1809 0.0198 0.3269 0.38 6ed1-a2-m1-cB_6ed1-a2-m1-cC
23 2oig-a1-m1-cC 90 74 0.2234 0.2333 0.2838 0.42 2oig-a1-m1-cC_2oig-a1-m1-cD
24 7mu5-a1-m1-cA 110 80 0.2340 0.2000 0.2750 0.50 7mu5-a1-m1-cG_7mu5-a1-m1-cA
25 1wdz-a1-m1-cB 222 73 0.2447 0.1036 0.3151 2.1 1wdz-a1-m1-cB_1wdz-a1-m1-cA
26 1wdz-a1-m1-cA 231 73 0.2447 0.0996 0.3151 2.1 1wdz-a1-m1-cB_1wdz-a1-m1-cA
27 3rde-a5-m1-cD 552 32 0.1170 0.0199 0.3438 6.4 3rde-a5-m1-cA_3rde-a5-m1-cD, 3rde-a5-m1-cB_3rde-a5-m1-cD, 3rde-a5-m1-cC_3rde-a5-m1-cD
28 3rde-a5-m1-cC 552 32 0.1170 0.0199 0.3438 6.4 3rde-a5-m1-cA_3rde-a5-m1-cC, 3rde-a5-m1-cC_3rde-a5-m1-cD
29 3rde-a5-m1-cB 552 32 0.1170 0.0199 0.3438 6.4 3rde-a5-m1-cB_3rde-a5-m1-cD
30 3rde-a5-m1-cA 552 32 0.1170 0.0199 0.3438 6.4 3rde-a5-m1-cA_3rde-a5-m1-cC, 3rde-a5-m1-cA_3rde-a5-m1-cD

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Reference:
Jacob Schwartz et al.

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