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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGEKKGEFVPLHVKVGNQNLVLGTLSTENI
PQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7vrr-a1-m1-cB 92 92 1.0000 1.0000 1.0000 1.57e-63 7vrr-a1-m1-cB_7vrr-a1-m1-cA
2 7vrr-a1-m1-cA 94 93 1.0000 0.9787 0.9892 1.44e-61 7vrr-a1-m1-cB_7vrr-a1-m1-cA
3 7vmf-a1-m1-cE 95 94 0.5761 0.5579 0.5638 3.79e-30 7vmf-a1-m1-cD_7vmf-a1-m1-cE
4 7vmf-a1-m1-cD 95 94 0.5761 0.5579 0.5638 3.79e-30 7vmf-a1-m1-cD_7vmf-a1-m1-cE
5 7vmi-a1-m1-cD 96 93 0.5217 0.5000 0.5161 1.90e-28 7vmi-a1-m1-cB_7vmi-a1-m1-cD
6 7vmi-a1-m1-cB 96 93 0.5217 0.5000 0.5161 1.90e-28 7vmi-a1-m1-cB_7vmi-a1-m1-cD
7 7vmh-a1-m1-cB 96 97 0.4565 0.4375 0.4330 3.87e-20 7vmh-a1-m1-cD_7vmh-a1-m1-cB
8 7vmh-a1-m1-cD 92 97 0.4565 0.4565 0.4330 1.02e-17 7vmh-a1-m1-cD_7vmh-a1-m1-cB
9 6j2z-a1-m1-cF 82 90 0.2826 0.3171 0.2889 2.37e-04 6j2z-a1-m1-cF_6j2z-a1-m1-cH
10 6j2z-a2-m1-cC 96 92 0.3261 0.3125 0.3261 3.48e-04 6j2z-a2-m1-cA_6j2z-a2-m1-cC
11 6j2z-a2-m1-cA 96 92 0.3261 0.3125 0.3261 3.48e-04 6j2z-a2-m1-cA_6j2z-a2-m1-cC
12 6j2z-a1-m1-cH 96 92 0.3261 0.3125 0.3261 3.48e-04 6j2z-a1-m1-cF_6j2z-a1-m1-cH
13 7wim-a4-m1-cS 89 101 0.3696 0.3820 0.3366 0.004 7wim-a4-m1-cR_7wim-a4-m1-cS
14 8b3k-a1-m1-cB 492 74 0.2391 0.0447 0.2973 2.7 8b3k-a1-m1-cA_8b3k-a1-m1-cB
15 8b3k-a1-m1-cA 492 74 0.2391 0.0447 0.2973 2.7 8b3k-a1-m1-cA_8b3k-a1-m1-cB
16 4nav-a1-m2-cD 182 38 0.1739 0.0879 0.4211 3.6 4nav-a1-m2-cC_4nav-a1-m2-cD
17 4nav-a1-m2-cC 182 38 0.1739 0.0879 0.4211 3.6 4nav-a1-m2-cC_4nav-a1-m2-cD
18 3b77-a1-m4-cB 181 83 0.2391 0.1215 0.2651 5.5 3b77-a1-m4-cB_3b77-a1-m4-cA
19 3kkz-a3-m1-cB 245 45 0.1522 0.0571 0.3111 6.5 3kkz-a3-m1-cB_3kkz-a3-m1-cA
20 3kkz-a3-m1-cA 251 45 0.1522 0.0558 0.3111 6.8 3kkz-a3-m1-cB_3kkz-a3-m1-cA
21 4z80-a3-m2-cB 466 22 0.1196 0.0236 0.5000 7.1 4z80-a3-m1-cA_4z80-a3-m2-cB
22 4z80-a3-m1-cA 466 22 0.1196 0.0236 0.5000 7.1 4z80-a3-m1-cA_4z80-a3-m2-cB
23 2c7y-a1-m1-cA 391 35 0.1522 0.0358 0.4000 8.2 2c7y-a1-m1-cA_2c7y-a1-m1-cB
24 2c7y-a1-m1-cB 396 35 0.1522 0.0354 0.4000 8.2 2c7y-a1-m1-cA_2c7y-a1-m1-cB
25 2wu9-a1-m1-cB 402 35 0.1522 0.0348 0.4000 8.2 2wu9-a1-m1-cB_2wu9-a1-m1-cA
26 2wu9-a1-m1-cA 403 35 0.1522 0.0347 0.4000 8.2 2wu9-a1-m1-cB_2wu9-a1-m1-cA
27 6ap4-a4-m1-cG 378 21 0.1196 0.0291 0.5238 9.2 6ap4-a4-m1-cG_6ap4-a4-m1-cH
28 6ap4-a4-m1-cH 383 21 0.1196 0.0287 0.5238 9.2 6ap4-a4-m1-cG_6ap4-a4-m1-cH

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Reference:
Jacob Schwartz et al.

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