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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
MEHLYIVSYDIRNQRRWRRLFKTMHGFGCWLQLSVFQCRLDRIRIIKMEAAINEIVNHAE
DHVLILDLGPAENVKPKVSSIGKTFDPILRQAVIV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7mid-a1-m1-cC 95 95 1.0000 1.0000 1.0000 5.89e-68 7mid-a1-m1-cD_7mid-a1-m1-cC
2 7mid-a1-m1-cD 91 91 0.9579 1.0000 1.0000 2.21e-65 7mid-a1-m1-cD_7mid-a1-m1-cC
3 7cr8-a6-m1-cF 93 66 0.2421 0.2473 0.3485 1.34e-08 7cr8-a6-m1-cE_7cr8-a6-m1-cF
4 7cr8-a6-m1-cE 93 66 0.2421 0.2473 0.3485 1.34e-08 7cr8-a6-m1-cE_7cr8-a6-m1-cF
5 7f84-a1-m1-cB 89 68 0.2316 0.2472 0.3235 5.61e-06 7f84-a1-m1-cA_7f84-a1-m1-cB
6 7f84-a1-m1-cA 89 68 0.2316 0.2472 0.3235 5.61e-06 7f84-a1-m1-cA_7f84-a1-m1-cB
7 3oq2-a3-m3-cA 99 91 0.2842 0.2727 0.2967 8.67e-05 3oq2-a3-m3-cA_3oq2-a3-m4-cB
8 3oq2-a3-m1-cA 99 91 0.2842 0.2727 0.2967 8.67e-05 3oq2-a3-m1-cA_3oq2-a3-m4-cB
9 3oq2-a2-m2-cA 99 91 0.2842 0.2727 0.2967 8.67e-05 3oq2-a2-m2-cA_3oq2-a2-m2-cB
10 3oq2-a3-m4-cB 102 91 0.2842 0.2647 0.2967 9.31e-05 3oq2-a3-m1-cA_3oq2-a3-m4-cB, 3oq2-a3-m3-cA_3oq2-a3-m4-cB
11 3oq2-a2-m2-cB 102 91 0.2842 0.2647 0.2967 9.31e-05 3oq2-a2-m2-cA_3oq2-a2-m2-cB
12 6k2e-a1-m1-cA 88 87 0.2737 0.2955 0.2989 3.16e-04 6k2e-a1-m1-cB_6k2e-a1-m1-cA
13 6k2e-a1-m1-cB 87 87 0.2737 0.2989 0.2989 3.20e-04 6k2e-a1-m1-cB_6k2e-a1-m1-cA
14 1zpw-a2-m2-cX 82 37 0.1579 0.1829 0.4054 0.002 1zpw-a2-m1-cX_1zpw-a2-m2-cX
15 1zpw-a2-m1-cX 82 37 0.1579 0.1829 0.4054 0.002 1zpw-a2-m1-cX_1zpw-a2-m2-cX
16 3eqv-a4-m1-cB 425 27 0.1368 0.0306 0.4815 0.11 3eqv-a4-m1-cB_3eqv-a4-m3-cA
17 3eqv-a3-m2-cB 425 27 0.1368 0.0306 0.4815 0.11 3eqv-a3-m2-cB_3eqv-a3-m1-cA
18 3eqv-a4-m3-cA 442 27 0.1368 0.0294 0.4815 0.11 3eqv-a4-m1-cB_3eqv-a4-m3-cA
19 3eqv-a3-m1-cA 442 27 0.1368 0.0294 0.4815 0.11 3eqv-a3-m2-cB_3eqv-a3-m1-cA
20 3mwy-a2-m2-cW 696 20 0.1053 0.0144 0.5000 0.60 3mwy-a2-m1-cW_3mwy-a2-m2-cW
21 3mwy-a2-m1-cW 696 20 0.1053 0.0144 0.5000 0.60 3mwy-a2-m1-cW_3mwy-a2-m2-cW
22 7kfu-a1-m1-cB 96 75 0.2000 0.1979 0.2533 1.1 7kfu-a1-m1-cA_7kfu-a1-m1-cB
23 7kfu-a1-m1-cA 96 75 0.2000 0.1979 0.2533 1.1 7kfu-a1-m1-cA_7kfu-a1-m1-cB
24 5g4d-a1-m2-cA 79 68 0.1789 0.2152 0.2500 1.4 5g4d-a1-m1-cA_5g4d-a1-m2-cA
25 5g4d-a1-m1-cA 79 68 0.1789 0.2152 0.2500 1.4 5g4d-a1-m1-cA_5g4d-a1-m2-cA
26 6eg7-a1-m1-cA 279 40 0.1158 0.0394 0.2750 2.2 6eg7-a1-m1-cB_6eg7-a1-m1-cA
27 6eg7-a1-m1-cB 276 40 0.1158 0.0399 0.2750 2.4 6eg7-a1-m1-cB_6eg7-a1-m1-cA
28 6mag-a3-m3-cC 282 40 0.1158 0.0390 0.2750 2.4 6mag-a3-m1-cC_6mag-a3-m3-cC
29 6mag-a3-m1-cC 282 40 0.1158 0.0390 0.2750 2.4 6mag-a3-m1-cC_6mag-a3-m3-cC
30 4ani-a1-m1-cB 154 101 0.2947 0.1818 0.2772 2.5 4ani-a1-m1-cB_4ani-a1-m1-cA
31 4ani-a1-m1-cA 156 101 0.2947 0.1795 0.2772 2.7 4ani-a1-m1-cB_4ani-a1-m1-cA
32 7ei1-a1-m1-cR 84 84 0.2211 0.2500 0.2500 3.9 7ei1-a1-m1-cQ_7ei1-a1-m1-cR
33 7ei1-a1-m1-cQ 84 84 0.2211 0.2500 0.2500 3.9 7ei1-a1-m1-cQ_7ei1-a1-m1-cR
34 5x89-a1-m2-cA 337 41 0.1158 0.0326 0.2683 5.3 5x89-a1-m1-cA_5x89-a1-m2-cA
35 5x89-a1-m1-cA 337 41 0.1158 0.0326 0.2683 5.3 5x89-a1-m1-cA_5x89-a1-m2-cA
36 2j0f-a2-m1-cD 446 73 0.2105 0.0448 0.2740 6.5 2j0f-a2-m1-cB_2j0f-a2-m1-cD
37 2j0f-a2-m1-cB 446 73 0.2105 0.0448 0.2740 6.5 2j0f-a2-m1-cB_2j0f-a2-m1-cD
38 1v25-a1-m1-cA 491 30 0.1474 0.0285 0.4667 6.9 1v25-a1-m1-cA_1v25-a1-m1-cB
39 1v25-a1-m1-cB 507 30 0.1474 0.0276 0.4667 6.9 1v25-a1-m1-cA_1v25-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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