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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPE
GHFFYQYAIKLLSNVDQMVSMTKRIASGHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4ihs-a3-m1-cC 90 90 1.0000 1.0000 1.0000 2.92e-64 4ihs-a3-m1-cA_4ihs-a3-m1-cC
2 4ihs-a3-m1-cA 89 89 0.9889 1.0000 1.0000 2.81e-63 4ihs-a3-m1-cA_4ihs-a3-m1-cC
3 3k1m-a4-m1-cA 300 87 0.9667 0.2900 1.0000 1.83e-58 3k1m-a4-m1-cA_3k1m-a4-m3-cB
4 3k1m-a2-m2-cA 300 87 0.9667 0.2900 1.0000 1.83e-58 3k1m-a2-m1-cA_3k1m-a2-m2-cA
5 3k1m-a2-m1-cA 300 87 0.9667 0.2900 1.0000 1.83e-58 3k1m-a2-m1-cA_3k1m-a2-m2-cA, 3k1m-a2-m1-cA_3k1m-a2-m4-cB
6 3k1m-a1-m1-cA 300 87 0.9667 0.2900 1.0000 1.83e-58 3k1m-a1-m1-cA_3k1m-a1-m1-cB
7 3k1m-a4-m3-cB 305 87 0.9667 0.2852 1.0000 2.90e-58 3k1m-a4-m1-cA_3k1m-a4-m3-cB
8 3k1m-a2-m4-cB 305 87 0.9667 0.2852 1.0000 2.90e-58 3k1m-a2-m1-cA_3k1m-a2-m4-cB
9 3k1m-a1-m1-cB 305 87 0.9667 0.2852 1.0000 2.90e-58 3k1m-a1-m1-cA_3k1m-a1-m1-cB
10 4x6g-a2-m1-cH 292 72 0.3222 0.0993 0.4028 5.52e-11 4x6g-a2-m1-cH_4x6g-a2-m1-cE
11 3hhg-a1-m1-cB 295 67 0.3111 0.0949 0.4179 9.18e-11 3hhg-a1-m1-cC_3hhg-a1-m1-cB
12 3hhg-a1-m1-cC 294 67 0.3111 0.0952 0.4179 9.52e-11 3hhg-a1-m1-cC_3hhg-a1-m1-cB
13 7dwo-a1-m2-cB 292 80 0.2778 0.0856 0.3125 9.20e-10 7dwo-a1-m1-cA_7dwo-a1-m2-cB, 7dwo-a1-m2-cA_7dwo-a1-m2-cB
14 7dwo-a1-m2-cA 292 80 0.2778 0.0856 0.3125 9.20e-10 7dwo-a1-m2-cA_7dwo-a1-m2-cB
15 7dwo-a1-m1-cA 292 80 0.2778 0.0856 0.3125 9.20e-10 7dwo-a1-m1-cA_7dwo-a1-m2-cB
16 5fo5-a1-m2-cA 88 79 0.3000 0.3068 0.3418 3.51e-09 5fo5-a1-m1-cA_5fo5-a1-m2-cA
17 5fo5-a1-m1-cA 88 79 0.3000 0.3068 0.3418 3.51e-09 5fo5-a1-m1-cA_5fo5-a1-m2-cA
18 7trv-a2-m1-cD 87 84 0.3000 0.3103 0.3214 3.58e-09 7trv-a2-m1-cC_7trv-a2-m1-cD
19 7trv-a2-m1-cC 87 66 0.2667 0.2759 0.3636 5.23e-09 7trv-a2-m1-cC_7trv-a2-m1-cD
20 3szp-a1-m2-cA 290 87 0.3444 0.1069 0.3563 8.91e-09 3szp-a1-m2-cB_3szp-a1-m2-cA
21 3szp-a1-m1-cA 290 87 0.3444 0.1069 0.3563 8.91e-09 3szp-a1-m2-cB_3szp-a1-m1-cA
22 3t1b-a1-m1-cC 290 87 0.3444 0.1069 0.3563 9.09e-09 3t1b-a1-m1-cD_3t1b-a1-m1-cC
23 3t1b-a1-m1-cA 290 87 0.3444 0.1069 0.3563 9.09e-09 3t1b-a1-m1-cB_3t1b-a1-m1-cA
24 3szp-a1-m2-cB 288 87 0.3444 0.1076 0.3563 9.51e-09 3szp-a1-m2-cB_3szp-a1-m1-cA, 3szp-a1-m2-cB_3szp-a1-m2-cA
25 3t1b-a1-m1-cB 289 87 0.3444 0.1073 0.3563 1.00e-08 3t1b-a1-m1-cB_3t1b-a1-m1-cA
26 4x6g-a2-m1-cE 307 72 0.3111 0.0912 0.3889 1.92e-08 4x6g-a2-m1-cH_4x6g-a2-m1-cE
27 5z4y-a1-m1-cB 89 80 0.2889 0.2921 0.3250 4.55e-07 5z4y-a1-m1-cA_5z4y-a1-m1-cB
28 5z4y-a1-m1-cA 89 80 0.2889 0.2921 0.3250 4.55e-07 5z4y-a1-m1-cA_5z4y-a1-m1-cB
29 3t1b-a1-m1-cD 289 87 0.3444 0.1073 0.3563 4.94e-07 3t1b-a1-m1-cD_3t1b-a1-m1-cC
30 5y2v-a1-m1-cA 304 59 0.2444 0.0724 0.3729 1.54e-05 5y2v-a1-m1-cD_5y2v-a1-m1-cA
31 3fzj-a3-m2-cJ 296 68 0.2889 0.0878 0.3824 1.56e-05 3fzj-a3-m1-cI_3fzj-a3-m2-cJ
32 3fzj-a3-m1-cI 296 68 0.2889 0.0878 0.3824 1.56e-05 3fzj-a3-m1-cI_3fzj-a3-m2-cJ
33 3fzj-a2-m1-cH 296 68 0.2889 0.0878 0.3824 1.56e-05 3fzj-a2-m1-cE_3fzj-a2-m1-cH
34 3fzj-a2-m1-cE 296 68 0.2889 0.0878 0.3824 1.56e-05 3fzj-a2-m1-cE_3fzj-a2-m1-cH
35 3fxu-a1-m2-cA 296 68 0.2889 0.0878 0.3824 1.56e-05 3fxu-a1-m2-cB_3fxu-a1-m2-cA
36 3fxu-a1-m1-cA 296 68 0.2889 0.0878 0.3824 1.56e-05 3fxu-a1-m2-cB_3fxu-a1-m1-cA
37 5y2v-a1-m1-cB 303 59 0.2444 0.0726 0.3729 1.70e-05 5y2v-a1-m1-cD_5y2v-a1-m1-cB
38 5ydw-a1-m2-cB 289 95 0.2667 0.0830 0.2526 1.73e-05 5ydw-a1-m1-cB_5ydw-a1-m2-cB, 5ydw-a1-m2-cB_5ydw-a1-m1-cA
39 5ydw-a1-m1-cB 289 95 0.2667 0.0830 0.2526 1.73e-05 5ydw-a1-m1-cB_5ydw-a1-m2-cB
40 5y2v-a1-m1-cD 302 59 0.2444 0.0728 0.3729 1.83e-05 5y2v-a1-m1-cD_5y2v-a1-m1-cA, 5y2v-a1-m1-cD_5y2v-a1-m1-cB
41 4pzj-a1-m2-cA 67 45 0.1667 0.2239 0.3333 0.001 4pzj-a1-m1-cA_4pzj-a1-m2-cA
42 4pzj-a1-m1-cA 67 45 0.1667 0.2239 0.3333 0.001 4pzj-a1-m1-cA_4pzj-a1-m2-cA
43 3isp-a1-m2-cA 290 57 0.2222 0.0690 0.3509 0.002 3isp-a1-m2-cB_3isp-a1-m2-cA
44 3isp-a1-m1-cA 290 57 0.2222 0.0690 0.3509 0.002 3isp-a1-m2-cB_3isp-a1-m1-cA
45 5ydw-a1-m1-cA 293 76 0.2222 0.0683 0.2632 0.007 5ydw-a1-m2-cB_5ydw-a1-m1-cA
46 3isp-a1-m2-cB 263 57 0.2222 0.0760 0.3509 0.008 3isp-a1-m2-cB_3isp-a1-m1-cA, 3isp-a1-m2-cB_3isp-a1-m2-cA
47 5whf-a1-m2-cE 86 29 0.1111 0.1163 0.3448 3.8 5whf-a1-m2-cH_5whf-a1-m2-cE
48 4yv3-a1-m1-cC 61 29 0.1111 0.1639 0.3448 3.9 4yv3-a1-m1-cC_4yv3-a1-m1-cA
49 5whf-a1-m2-cH 84 29 0.1111 0.1190 0.3448 4.1 5whf-a1-m2-cH_5whf-a1-m2-cE, 5whf-a1-m2-cH_5whf-a1-m2-cG
50 5whf-a1-m2-cD 85 29 0.1111 0.1176 0.3448 4.1 5whf-a1-m2-cD_5whf-a1-m2-cG
51 4ypc-a1-m3-cA 83 29 0.1111 0.1205 0.3448 4.3 4ypc-a1-m2-cA_4ypc-a1-m3-cA
52 4ypc-a1-m2-cA 83 29 0.1111 0.1205 0.3448 4.3 4ypc-a1-m2-cA_4ypc-a1-m3-cA
53 4yv3-a1-m1-cA 75 29 0.1111 0.1333 0.3448 4.4 4yv3-a1-m1-cC_4yv3-a1-m1-cA
54 5whf-a1-m2-cG 88 29 0.1111 0.1136 0.3448 4.5 5whf-a1-m2-cD_5whf-a1-m2-cG, 5whf-a1-m2-cH_5whf-a1-m2-cG
55 3uf1-a2-m1-cC 105 29 0.1111 0.0952 0.3448 4.5 3uf1-a2-m1-cC_3uf1-a2-m1-cD
56 3uf1-a2-m1-cD 108 29 0.1111 0.0926 0.3448 4.6 3uf1-a2-m1-cC_3uf1-a2-m1-cD
57 6a9p-a1-m1-cH 101 27 0.1111 0.0990 0.3704 7.0 6a9p-a1-m1-cH_6a9p-a1-m1-cA
58 6a9p-a2-m1-cC 104 27 0.1111 0.0962 0.3704 7.1 6a9p-a2-m1-cE_6a9p-a2-m1-cC
59 6a9p-a2-m1-cF 100 27 0.1111 0.1000 0.3704 7.4 6a9p-a2-m1-cF_6a9p-a2-m1-cE
60 6a9p-a2-m1-cE 102 27 0.1111 0.0980 0.3704 7.9 6a9p-a2-m1-cE_6a9p-a2-m1-cC, 6a9p-a2-m1-cF_6a9p-a2-m1-cE
61 6a9p-a1-m1-cA 103 27 0.1111 0.0971 0.3704 8.0 6a9p-a1-m1-cH_6a9p-a1-m1-cA
62 1o20-a2-m4-cA 412 22 0.1000 0.0218 0.4091 8.1 1o20-a2-m1-cA_1o20-a2-m4-cA, 1o20-a2-m3-cA_1o20-a2-m4-cA
63 1o20-a2-m3-cA 412 22 0.1000 0.0218 0.4091 8.1 1o20-a2-m3-cA_1o20-a2-m4-cA
64 1o20-a2-m1-cA 412 22 0.1000 0.0218 0.4091 8.1 1o20-a2-m1-cA_1o20-a2-m4-cA
65 7ci1-a1-m1-cB 295 66 0.2111 0.0644 0.2879 9.7 7ci1-a1-m1-cB_7ci1-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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