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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
MFEQEVTITAPNGLDTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTV
VTISAEGEDEQKAVEHLVKLMAELE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ccd-a1-m1-cB 85 85 1.0000 1.0000 1.0000 1.07e-56 3ccd-a1-m1-cA_3ccd-a1-m1-cB
2 3ccd-a1-m1-cA 85 85 1.0000 1.0000 1.0000 1.07e-56 3ccd-a1-m1-cA_3ccd-a1-m1-cB
3 3le5-a2-m3-cB 87 80 0.4471 0.4368 0.4750 6.02e-19 3le5-a2-m1-cB_3le5-a2-m3-cB
4 3le5-a2-m1-cB 87 80 0.4471 0.4368 0.4750 6.02e-19 3le5-a2-m1-cB_3le5-a2-m3-cB
5 2hpr-a2-m2-cA 86 76 0.3176 0.3140 0.3553 7.16e-12 2hpr-a2-m1-cA_2hpr-a2-m2-cA
6 2hpr-a2-m1-cA 86 76 0.3176 0.3140 0.3553 7.16e-12 2hpr-a2-m1-cA_2hpr-a2-m2-cA
7 1sph-a1-m1-cB 87 74 0.2941 0.2874 0.3378 3.70e-11 1sph-a1-m1-cA_1sph-a1-m1-cB
8 1sph-a1-m1-cA 87 74 0.2941 0.2874 0.3378 3.70e-11 1sph-a1-m1-cA_1sph-a1-m1-cB
9 1y50-a2-m4-cA 87 62 0.2235 0.2184 0.3065 2.45e-06 1y50-a2-m2-cA_1y50-a2-m4-cA, 1y50-a2-m3-cA_1y50-a2-m4-cA
10 1y50-a2-m3-cA 87 62 0.2235 0.2184 0.3065 2.45e-06 1y50-a2-m3-cA_1y50-a2-m4-cA
11 1y50-a2-m2-cA 87 62 0.2235 0.2184 0.3065 2.45e-06 1y50-a2-m2-cA_1y50-a2-m4-cA
12 3act-a1-m1-cB 822 30 0.1412 0.0146 0.4000 5.4 3act-a1-m1-cA_3act-a1-m1-cB
13 3act-a1-m1-cA 822 30 0.1412 0.0146 0.4000 5.4 3act-a1-m1-cA_3act-a1-m1-cB
14 3gzs-a2-m1-cB 481 36 0.1765 0.0312 0.4167 7.6 3gzs-a2-m1-cA_3gzs-a2-m1-cB
15 3gzs-a2-m1-cA 481 36 0.1765 0.0312 0.4167 7.6 3gzs-a2-m1-cA_3gzs-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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