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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
MFLTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG
DLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1tjc-a1-m1-cB 95 95 1.0000 1.0000 1.0000 8.53e-66 1tjc-a1-m1-cA_1tjc-a1-m1-cB
2 1tjc-a1-m1-cA 95 95 1.0000 1.0000 1.0000 8.53e-66 1tjc-a1-m1-cA_1tjc-a1-m1-cB
3 2yq8-a1-m1-cB 221 91 0.9368 0.4027 0.9780 5.20e-58 2yq8-a1-m1-cA_2yq8-a1-m1-cB
4 2yq8-a1-m1-cA 220 91 0.9368 0.4045 0.9780 6.92e-58 2yq8-a1-m1-cA_2yq8-a1-m1-cB
5 2hyz-a1-m2-cA 136 85 0.2947 0.2059 0.3294 0.004 2hyz-a1-m1-cA_2hyz-a1-m2-cA
6 2hyz-a1-m2-cA 136 84 0.2947 0.2059 0.3333 0.010 2hyz-a1-m1-cA_2hyz-a1-m2-cA
7 2hyz-a1-m2-cA 136 76 0.2632 0.1838 0.3289 0.016 2hyz-a1-m1-cA_2hyz-a1-m2-cA
8 2hyz-a1-m1-cA 136 85 0.2947 0.2059 0.3294 0.004 2hyz-a1-m1-cA_2hyz-a1-m2-cA
9 2hyz-a1-m1-cA 136 84 0.2947 0.2059 0.3333 0.010 2hyz-a1-m1-cA_2hyz-a1-m2-cA
10 2hyz-a1-m1-cA 136 76 0.2632 0.1838 0.3289 0.016 2hyz-a1-m1-cA_2hyz-a1-m2-cA
11 2avp-a1-m4-cA 68 75 0.2632 0.3676 0.3333 0.013 2avp-a1-m2-cA_2avp-a1-m4-cA
12 2avp-a1-m4-cA 68 35 0.1789 0.2500 0.4857 0.014 2avp-a1-m2-cA_2avp-a1-m4-cA
13 2avp-a1-m2-cA 68 75 0.2632 0.3676 0.3333 0.013 2avp-a1-m2-cA_2avp-a1-m4-cA
14 2avp-a1-m2-cA 68 35 0.1789 0.2500 0.4857 0.014 2avp-a1-m2-cA_2avp-a1-m4-cA
15 2wqh-a1-m2-cA 104 83 0.2737 0.2500 0.3133 0.027 2wqh-a1-m1-cA_2wqh-a1-m2-cA
16 2wqh-a1-m2-cA 104 74 0.2421 0.2212 0.3108 0.23 2wqh-a1-m1-cA_2wqh-a1-m2-cA
17 2wqh-a1-m1-cA 104 83 0.2737 0.2500 0.3133 0.027 2wqh-a1-m1-cA_2wqh-a1-m2-cA
18 2wqh-a1-m1-cA 104 74 0.2421 0.2212 0.3108 0.23 2wqh-a1-m1-cA_2wqh-a1-m2-cA
19 8c9t-a2-m1-cB 221 70 0.1895 0.0814 0.2571 0.70 8c9t-a2-m1-cB_8c9t-a2-m1-cC
20 8c9t-a2-m1-cC 228 81 0.2105 0.0877 0.2469 0.83 8c9t-a2-m1-cB_8c9t-a2-m1-cC
21 3tr6-a1-m2-cA 217 31 0.1263 0.0553 0.3871 2.5 3tr6-a1-m1-cA_3tr6-a1-m2-cA
22 3tr6-a1-m1-cA 217 31 0.1263 0.0553 0.3871 2.5 3tr6-a1-m1-cA_3tr6-a1-m2-cA
23 1s5a-a1-m1-cB 138 46 0.1895 0.1304 0.3913 2.7 1s5a-a1-m1-cA_1s5a-a1-m1-cB, 1s5a-a1-m1-cB_1s5a-a1-m1-cC, 1s5a-a1-m1-cD_1s5a-a1-m1-cB
24 1s5a-a1-m1-cD 134 46 0.1895 0.1343 0.3913 2.7 1s5a-a1-m1-cD_1s5a-a1-m1-cB
25 1s5a-a1-m1-cA 135 46 0.1895 0.1333 0.3913 2.7 1s5a-a1-m1-cA_1s5a-a1-m1-cB
26 1s5a-a1-m1-cC 138 46 0.1895 0.1304 0.3913 2.8 1s5a-a1-m1-cB_1s5a-a1-m1-cC
27 5g6m-a1-m2-cA 362 36 0.1368 0.0359 0.3611 3.8 5g6m-a1-m1-cA_5g6m-a1-m2-cA
28 5g6m-a1-m1-cA 362 36 0.1368 0.0359 0.3611 3.8 5g6m-a1-m1-cA_5g6m-a1-m2-cA
29 6iqs-a1-m1-cA 256 42 0.1579 0.0586 0.3571 4.5 6iqs-a1-m1-cA_6iqs-a1-m1-cB
30 6iqs-a1-m1-cB 259 42 0.1579 0.0579 0.3571 4.9 6iqs-a1-m1-cA_6iqs-a1-m1-cB
31 1fch-a5-m1-cA 302 25 0.1158 0.0364 0.4400 5.2 1fch-a5-m2-cB_1fch-a5-m1-cA
32 1fch-a5-m2-cB 297 25 0.1158 0.0370 0.4400 5.5 1fch-a5-m2-cB_1fch-a5-m1-cA
33 2x5f-a1-m1-cB 428 63 0.1895 0.0421 0.2857 6.6 2x5f-a1-m1-cA_2x5f-a1-m1-cB
34 2x5f-a1-m1-cA 428 63 0.1895 0.0421 0.2857 6.6 2x5f-a1-m1-cA_2x5f-a1-m1-cB
35 7tl5-a1-m1-cB 612 59 0.2105 0.0327 0.3390 6.8 7tl5-a1-m1-cA_7tl5-a1-m1-cB
36 7tl5-a1-m1-cA 612 59 0.2105 0.0327 0.3390 6.8 7tl5-a1-m1-cA_7tl5-a1-m1-cB
37 5lyn-a1-m1-cB 133 74 0.2000 0.1429 0.2568 9.2 5lyn-a1-m1-cA_5lyn-a1-m1-cB
38 5lyn-a1-m1-cA 133 74 0.2000 0.1429 0.2568 9.2 5lyn-a1-m1-cA_5lyn-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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