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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MGSMHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDPEVNSRFYIYEAYK
DEDAVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3qmq-a2-m1-cC 99 99 1.0000 1.0000 1.0000 6.12e-72 3qmq-a2-m1-cB_3qmq-a2-m1-cC
2 3qmq-a2-m1-cB 97 97 0.9798 1.0000 1.0000 3.30e-70 3qmq-a2-m1-cB_3qmq-a2-m1-cC
3 2gff-a1-m1-cB 97 93 0.6869 0.7010 0.7312 2.36e-44 2gff-a1-m1-cA_2gff-a1-m1-cB
4 2gff-a1-m1-cA 94 93 0.6869 0.7234 0.7312 2.54e-44 2gff-a1-m1-cA_2gff-a1-m1-cB
5 2omo-a3-m1-cG 95 95 0.4040 0.4211 0.4211 6.31e-16 2omo-a3-m1-cG_2omo-a3-m1-cD
6 2omo-a3-m1-cD 100 95 0.4040 0.4000 0.4211 8.51e-16 2omo-a3-m1-cG_2omo-a3-m1-cD
7 4zos-a2-m1-cB 97 55 0.1818 0.1856 0.3273 0.001 4zos-a2-m1-cB_4zos-a2-m1-cA
8 4zos-a2-m1-cA 105 55 0.1818 0.1714 0.3273 0.001 4zos-a2-m1-cB_4zos-a2-m1-cA
9 3kkf-a2-m6-cA 100 71 0.2020 0.2000 0.2817 0.25 3kkf-a2-m1-cA_3kkf-a2-m6-cA, 3kkf-a2-m3-cA_3kkf-a2-m6-cA
10 3kkf-a2-m3-cA 100 71 0.2020 0.2000 0.2817 0.25 3kkf-a2-m3-cA_3kkf-a2-m6-cA
11 3kkf-a2-m1-cA 100 71 0.2020 0.2000 0.2817 0.25 3kkf-a2-m1-cA_3kkf-a2-m6-cA
12 1iuj-a2-m2-cB 103 81 0.2020 0.1942 0.2469 0.40 1iuj-a2-m1-cA_1iuj-a2-m2-cB, 1iuj-a2-m2-cA_1iuj-a2-m2-cB
13 1iuj-a2-m2-cA 102 81 0.2020 0.1961 0.2469 0.46 1iuj-a2-m1-cA_1iuj-a2-m2-cA, 1iuj-a2-m2-cA_1iuj-a2-m2-cB
14 1iuj-a2-m1-cA 102 81 0.2020 0.1961 0.2469 0.46 1iuj-a2-m1-cA_1iuj-a2-m2-cA, 1iuj-a2-m1-cA_1iuj-a2-m2-cB
15 1y0h-a1-m1-cA 101 54 0.1414 0.1386 0.2593 0.95 1y0h-a1-m1-cB_1y0h-a1-m1-cA
16 1y0h-a1-m1-cB 98 54 0.1414 0.1429 0.2593 0.97 1y0h-a1-m1-cB_1y0h-a1-m1-cA
17 5vxb-a4-m1-cC 167 40 0.1313 0.0778 0.3250 2.7 5vxb-a4-m1-cB_5vxb-a4-m1-cC
18 5vxb-a4-m1-cB 167 40 0.1313 0.0778 0.3250 2.7 5vxb-a4-m1-cB_5vxb-a4-m1-cC
19 3r64-a1-m1-cD 459 62 0.1616 0.0349 0.2581 2.8 3r64-a1-m1-cB_3r64-a1-m1-cD, 3r64-a1-m1-cC_3r64-a1-m1-cD, 3r64-a1-m1-cD_3r64-a1-m1-cA
20 3r64-a1-m1-cA 468 62 0.1616 0.0342 0.2581 2.8 3r64-a1-m1-cD_3r64-a1-m1-cA
21 4pxn-a1-m2-cB 498 28 0.0909 0.0181 0.3214 4.2 4pxn-a1-m1-cA_4pxn-a1-m2-cB, 4pxn-a1-m1-cB_4pxn-a1-m2-cB, 4pxn-a1-m2-cA_4pxn-a1-m2-cB
22 4pxn-a1-m2-cA 498 28 0.0909 0.0181 0.3214 4.2 4pxn-a1-m2-cA_4pxn-a1-m2-cB
23 4pxn-a1-m1-cB 498 28 0.0909 0.0181 0.3214 4.2 4pxn-a1-m1-cB_4pxn-a1-m2-cB
24 4pxn-a1-m1-cA 498 28 0.0909 0.0181 0.3214 4.2 4pxn-a1-m1-cA_4pxn-a1-m2-cB
25 2ntz-a1-m1-cA 177 32 0.1515 0.0847 0.4688 8.6 2ntz-a1-m1-cB_2ntz-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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