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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP
QGEILLQLANQVLPQISQALQACNEPQQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5fo5-a1-m2-cA 88 88 1.0000 1.0000 1.0000 5.55e-59 5fo5-a1-m1-cA_5fo5-a1-m2-cA
2 5fo5-a1-m1-cA 88 88 1.0000 1.0000 1.0000 5.55e-59 5fo5-a1-m1-cA_5fo5-a1-m2-cA
3 4ihs-a3-m1-cA 89 79 0.3068 0.3034 0.3418 3.08e-09 4ihs-a3-m1-cA_4ihs-a3-m1-cC
4 4ihs-a3-m1-cC 90 79 0.3068 0.3000 0.3418 3.43e-09 4ihs-a3-m1-cA_4ihs-a3-m1-cC
5 3k1m-a4-m3-cB 305 79 0.3068 0.0885 0.3418 3.41e-08 3k1m-a4-m1-cA_3k1m-a4-m3-cB
6 3k1m-a2-m4-cB 305 79 0.3068 0.0885 0.3418 3.41e-08 3k1m-a2-m1-cA_3k1m-a2-m4-cB
7 3k1m-a1-m1-cB 305 79 0.3068 0.0885 0.3418 3.41e-08 3k1m-a1-m1-cA_3k1m-a1-m1-cB
8 3k1m-a4-m1-cA 300 79 0.3068 0.0900 0.3418 3.74e-08 3k1m-a4-m1-cA_3k1m-a4-m3-cB
9 3k1m-a2-m2-cA 300 79 0.3068 0.0900 0.3418 3.74e-08 3k1m-a2-m1-cA_3k1m-a2-m2-cA
10 3k1m-a2-m1-cA 300 79 0.3068 0.0900 0.3418 3.74e-08 3k1m-a2-m1-cA_3k1m-a2-m2-cA, 3k1m-a2-m1-cA_3k1m-a2-m4-cB
11 3k1m-a1-m1-cA 300 79 0.3068 0.0900 0.3418 3.74e-08 3k1m-a1-m1-cA_3k1m-a1-m1-cB
12 5y9s-a1-m1-cB 272 75 0.2955 0.0956 0.3467 1.15e-06 5y9s-a1-m1-cB_5y9s-a1-m1-cA, 5y9s-a1-m1-cB_5y9s-a1-m1-cD
13 5y9s-a1-m1-cA 277 75 0.2955 0.0939 0.3467 1.21e-06 5y9s-a1-m1-cA_5y9s-a1-m1-cC, 5y9s-a1-m1-cA_5y9s-a1-m1-cD, 5y9s-a1-m1-cB_5y9s-a1-m1-cA
14 5y9s-a1-m1-cC 291 75 0.2955 0.0893 0.3467 1.31e-06 5y9s-a1-m1-cA_5y9s-a1-m1-cC, 5y9s-a1-m1-cC_5y9s-a1-m1-cD
15 5y9s-a1-m1-cD 293 75 0.2955 0.0887 0.3467 1.45e-06 5y9s-a1-m1-cA_5y9s-a1-m1-cD, 5y9s-a1-m1-cB_5y9s-a1-m1-cD, 5y9s-a1-m1-cC_5y9s-a1-m1-cD
16 3isp-a1-m2-cB 263 74 0.3750 0.1255 0.4459 2.78e-06 3isp-a1-m2-cB_3isp-a1-m1-cA, 3isp-a1-m2-cB_3isp-a1-m2-cA
17 3isp-a1-m2-cA 290 74 0.3750 0.1138 0.4459 3.45e-06 3isp-a1-m2-cB_3isp-a1-m2-cA
18 3isp-a1-m1-cA 290 74 0.3750 0.1138 0.4459 3.45e-06 3isp-a1-m2-cB_3isp-a1-m1-cA
19 7dwo-a1-m2-cB 292 81 0.3068 0.0925 0.3333 2.29e-05 7dwo-a1-m1-cA_7dwo-a1-m2-cB, 7dwo-a1-m2-cA_7dwo-a1-m2-cB
20 7dwo-a1-m2-cA 292 81 0.3068 0.0925 0.3333 2.29e-05 7dwo-a1-m2-cA_7dwo-a1-m2-cB
21 7dwo-a1-m1-cA 292 81 0.3068 0.0925 0.3333 2.29e-05 7dwo-a1-m1-cA_7dwo-a1-m2-cB
22 6xtu-a1-m1-cB 286 68 0.2614 0.0804 0.3382 3.12e-05 6xtu-a1-m1-cA_6xtu-a1-m1-cB
23 6xtu-a1-m1-cA 286 68 0.2614 0.0804 0.3382 3.12e-05 6xtu-a1-m1-cA_6xtu-a1-m1-cB
24 5ydw-a1-m2-cB 289 79 0.2841 0.0865 0.3165 4.23e-05 5ydw-a1-m1-cB_5ydw-a1-m2-cB, 5ydw-a1-m2-cB_5ydw-a1-m1-cA
25 5ydw-a1-m1-cB 289 79 0.2841 0.0865 0.3165 4.23e-05 5ydw-a1-m1-cB_5ydw-a1-m2-cB
26 3fzj-a3-m2-cJ 296 79 0.2841 0.0845 0.3165 0.001 3fzj-a3-m1-cI_3fzj-a3-m2-cJ
27 3fzj-a3-m1-cI 296 79 0.2841 0.0845 0.3165 0.001 3fzj-a3-m1-cI_3fzj-a3-m2-cJ
28 3fzj-a2-m1-cH 296 79 0.2841 0.0845 0.3165 0.001 3fzj-a2-m1-cE_3fzj-a2-m1-cH
29 3fzj-a2-m1-cE 296 79 0.2841 0.0845 0.3165 0.001 3fzj-a2-m1-cE_3fzj-a2-m1-cH
30 3fxu-a1-m2-cA 296 79 0.2841 0.0845 0.3165 0.001 3fxu-a1-m2-cB_3fxu-a1-m2-cA
31 3fxu-a1-m1-cA 296 79 0.2841 0.0845 0.3165 0.001 3fxu-a1-m2-cB_3fxu-a1-m1-cA
32 3hhg-a1-m1-cB 295 63 0.2273 0.0678 0.3175 0.020 3hhg-a1-m1-cC_3hhg-a1-m1-cB
33 3hhg-a1-m1-cC 294 63 0.2273 0.0680 0.3175 0.021 3hhg-a1-m1-cC_3hhg-a1-m1-cB
34 7trv-a2-m1-cD 87 51 0.2045 0.2069 0.3529 0.024 7trv-a2-m1-cC_7trv-a2-m1-cD
35 7trv-a2-m1-cC 87 51 0.2045 0.2069 0.3529 0.026 7trv-a2-m1-cC_7trv-a2-m1-cD
36 7u56-a1-m1-cB 340 43 0.1818 0.0471 0.3721 2.9 7u56-a1-m1-cB_7u56-a1-m1-cA
37 7u56-a1-m1-cA 346 43 0.1818 0.0462 0.3721 2.9 7u56-a1-m1-cB_7u56-a1-m1-cA
38 3r25-a7-m1-cC 390 63 0.2045 0.0462 0.2857 3.4 3r25-a7-m1-cA_3r25-a7-m1-cC
39 3r25-a7-m1-cA 390 63 0.2045 0.0462 0.2857 3.4 3r25-a7-m1-cA_3r25-a7-m1-cC
40 4k5c-a1-m1-cA 170 36 0.1477 0.0765 0.3611 4.0 4k5c-a1-m1-cA_4k5c-a1-m1-cB
41 4k5c-a1-m1-cB 171 36 0.1477 0.0760 0.3611 4.2 4k5c-a1-m1-cA_4k5c-a1-m1-cB
42 2esn-a1-m1-cD 298 41 0.1818 0.0537 0.3902 9.1 2esn-a1-m1-cD_2esn-a1-m1-cA, 2esn-a1-m1-cD_2esn-a1-m1-cB
43 2esn-a1-m1-cA 299 41 0.1818 0.0535 0.3902 9.3 2esn-a1-m1-cD_2esn-a1-m1-cA
44 2esn-a1-m1-cB 300 41 0.1818 0.0533 0.3902 9.3 2esn-a1-m1-cD_2esn-a1-m1-cB
45 3i12-a2-m1-cC 348 42 0.1705 0.0431 0.3571 9.7 3i12-a2-m1-cC_3i12-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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