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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGT
MDKVREREKDNSGTTNIDDIDWDNL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7v6w-a2-m1-cJ 85 85 1.0000 1.0000 1.0000 2.48e-58 7v6w-a2-m1-cI_7v6w-a2-m1-cJ
2 7v6w-a2-m1-cK 58 58 0.6824 1.0000 1.0000 1.91e-37 7v6w-a2-m1-cI_7v6w-a2-m1-cK
3 7v6w-a2-m1-cI 56 56 0.6588 1.0000 1.0000 5.71e-36 7v6w-a2-m1-cI_7v6w-a2-m1-cJ, 7v6w-a2-m1-cI_7v6w-a2-m1-cK
4 3oei-a3-m1-cI 83 78 0.2706 0.2771 0.2949 3.17e-07 3oei-a3-m1-cI_3oei-a3-m1-cJ
5 3d55-a4-m2-cB 84 51 0.2118 0.2143 0.3529 4.11e-07 3d55-a4-m2-cB_3d55-a4-m1-cC
6 3d55-a4-m1-cA 68 51 0.2118 0.2647 0.3529 4.12e-07 3d55-a4-m1-cA_3d55-a4-m1-cC
7 3cto-a7-m1-cA 68 51 0.2118 0.2647 0.3529 4.12e-07 3cto-a7-m1-cA_3cto-a7-m1-cB, 3cto-a7-m1-cD_3cto-a7-m1-cA
8 3cto-a6-m5-cA 68 51 0.2118 0.2647 0.3529 4.12e-07 3cto-a6-m5-cA_3cto-a6-m1-cB
9 3oei-a3-m1-cJ 86 51 0.2118 0.2093 0.3529 4.19e-07 3oei-a3-m1-cI_3oei-a3-m1-cJ
10 3d55-a4-m1-cC 86 51 0.2118 0.2093 0.3529 4.19e-07 3d55-a4-m1-cA_3d55-a4-m1-cC, 3d55-a4-m2-cB_3d55-a4-m1-cC
11 3cto-a5-m5-cC 86 51 0.2118 0.2093 0.3529 4.19e-07 3cto-a5-m1-cD_3cto-a5-m5-cC
12 3cto-a7-m1-cB 83 51 0.2118 0.2169 0.3529 4.25e-07 3cto-a7-m1-cA_3cto-a7-m1-cB
13 3cto-a6-m1-cB 83 51 0.2118 0.2169 0.3529 4.25e-07 3cto-a6-m5-cA_3cto-a6-m1-cB
14 3cto-a7-m1-cD 65 51 0.2118 0.2769 0.3529 4.44e-07 3cto-a7-m1-cD_3cto-a7-m1-cA
15 3cto-a5-m1-cD 65 51 0.2118 0.2769 0.3529 4.44e-07 3cto-a5-m1-cD_3cto-a5-m5-cC
16 2a6q-a3-m1-cC 86 55 0.2235 0.2209 0.3455 1.22e-04 2a6q-a3-m1-cD_2a6q-a3-m1-cC
17 2a6q-a3-m1-cA 86 55 0.2235 0.2209 0.3455 1.22e-04 2a6q-a3-m1-cD_2a6q-a3-m1-cA
18 2a6q-a3-m1-cD 58 51 0.2118 0.3103 0.3529 1.40e-04 2a6q-a3-m1-cB_2a6q-a3-m1-cD, 2a6q-a3-m1-cD_2a6q-a3-m1-cA, 2a6q-a3-m1-cD_2a6q-a3-m1-cC
19 2a6q-a3-m1-cB 58 51 0.2118 0.3103 0.3529 1.40e-04 2a6q-a3-m1-cB_2a6q-a3-m1-cD
20 3g5o-a1-m1-cD 92 67 0.2588 0.2391 0.3284 7.38e-04 3g5o-a1-m1-cA_3g5o-a1-m1-cD
21 3g5o-a1-m1-cA 92 67 0.2588 0.2391 0.3284 7.38e-04 3g5o-a1-m1-cA_3g5o-a1-m1-cD
22 6l8e-a2-m1-cL 57 56 0.2000 0.2982 0.3036 8.30e-04 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
23 6l8e-a2-m1-cJ 59 56 0.2000 0.2881 0.3036 0.001 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
24 6l8e-a1-m1-cB 54 55 0.2000 0.3148 0.3091 0.001 6l8e-a1-m1-cB_6l8e-a1-m1-cA
25 6l8e-a1-m1-cA 83 56 0.2000 0.2048 0.3036 0.001 6l8e-a1-m1-cB_6l8e-a1-m1-cA
26 2hi9-a1-m1-cB 354 56 0.2000 0.0480 0.3036 0.74 2hi9-a1-m1-cB_2hi9-a1-m1-cA, 2hi9-a1-m1-cC_2hi9-a1-m1-cB
27 2hi9-a1-m1-cA 356 56 0.2000 0.0478 0.3036 0.79 2hi9-a1-m1-cB_2hi9-a1-m1-cA, 2hi9-a1-m1-cC_2hi9-a1-m1-cA
28 2hi9-a1-m1-cC 346 56 0.2000 0.0491 0.3036 0.90 2hi9-a1-m1-cC_2hi9-a1-m1-cA, 2hi9-a1-m1-cC_2hi9-a1-m1-cB
29 7jqp-a1-m1-cD 353 27 0.1294 0.0312 0.4074 2.4 7jqp-a1-m1-cD_7jqp-a1-m1-cC
30 7jqp-a1-m1-cC 354 27 0.1294 0.0311 0.4074 2.4 7jqp-a1-m1-cD_7jqp-a1-m1-cC
31 6m04-a1-m1-cF 713 50 0.2118 0.0252 0.3600 8.6 6m04-a1-m1-cF_6m04-a1-m1-cA, 6m04-a1-m1-cF_6m04-a1-m1-cE
32 6m04-a1-m1-cE 714 50 0.2118 0.0252 0.3600 8.6 6m04-a1-m1-cF_6m04-a1-m1-cE
33 6m04-a1-m1-cA 714 50 0.2118 0.0252 0.3600 8.6 6m04-a1-m1-cF_6m04-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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