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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEHPVLVKITLDEGQPAYAPGL
YTVHLSSFKVGQFGSLMIDRLRLVPAK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2gvb-a1-m1-cB 87 87 1.0000 1.0000 1.0000 2.11e-61 2gvb-a1-m1-cA_2gvb-a1-m1-cB
2 2gvb-a1-m1-cA 87 87 1.0000 1.0000 1.0000 2.11e-61 2gvb-a1-m1-cA_2gvb-a1-m1-cB
3 1gvp-a1-m2-cA 87 87 0.9885 0.9885 0.9885 1.98e-60 1gvp-a1-m1-cA_1gvp-a1-m2-cA
4 1gvp-a1-m1-cA 87 87 0.9885 0.9885 0.9885 1.98e-60 1gvp-a1-m1-cA_1gvp-a1-m2-cA
5 3d8k-a1-m1-cC 341 67 0.2299 0.0587 0.2985 0.22 3d8k-a1-m1-cB_3d8k-a1-m1-cC, 3d8k-a1-m1-cD_3d8k-a1-m1-cC
6 3d8k-a1-m1-cD 336 67 0.2414 0.0625 0.3134 0.42 3d8k-a1-m1-cD_3d8k-a1-m1-cA, 3d8k-a1-m1-cD_3d8k-a1-m1-cC
7 6j3g-a1-m1-cB 257 62 0.1954 0.0661 0.2742 0.42 6j3g-a1-m1-cB_6j3g-a1-m1-cA
8 3d8k-a1-m1-cB 339 67 0.2414 0.0619 0.3134 0.48 3d8k-a1-m1-cB_3d8k-a1-m1-cC
9 6j3g-a1-m1-cA 265 57 0.1839 0.0604 0.2807 0.91 6j3g-a1-m1-cB_6j3g-a1-m1-cA
10 3tzq-a2-m1-cH 261 51 0.1724 0.0575 0.2941 2.0 3tzq-a2-m1-cE_3tzq-a2-m1-cH, 3tzq-a2-m1-cF_3tzq-a2-m1-cH, 3tzq-a2-m1-cG_3tzq-a2-m1-cH
11 3tzq-a2-m1-cF 261 51 0.1724 0.0575 0.2941 2.0 3tzq-a2-m1-cF_3tzq-a2-m1-cH
12 3tzq-a2-m1-cG 260 51 0.1724 0.0577 0.2941 2.2 3tzq-a2-m1-cG_3tzq-a2-m1-cH
13 3tzq-a2-m1-cE 260 51 0.1724 0.0577 0.2941 2.2 3tzq-a2-m1-cE_3tzq-a2-m1-cH
14 3d8k-a1-m1-cA 337 67 0.2299 0.0593 0.2985 5.0 3d8k-a1-m1-cD_3d8k-a1-m1-cA
15 2c9q-a1-m2-cA 102 33 0.1609 0.1373 0.4242 6.2 2c9q-a1-m1-cA_2c9q-a1-m2-cA
16 2c9q-a1-m1-cA 102 33 0.1609 0.1373 0.4242 6.2 2c9q-a1-m1-cA_2c9q-a1-m2-cA
17 2poz-a1-m1-cC 367 15 0.1149 0.0272 0.6667 7.7 2poz-a1-m1-cC_2poz-a1-m1-cH
18 2poz-a1-m1-cG 368 15 0.1149 0.0272 0.6667 7.9 2poz-a1-m1-cG_2poz-a1-m1-cH
19 2poz-a1-m1-cB 368 15 0.1149 0.0272 0.6667 7.9 2poz-a1-m1-cB_2poz-a1-m1-cH
20 2poz-a1-m1-cH 370 15 0.1149 0.0270 0.6667 7.9 2poz-a1-m1-cB_2poz-a1-m1-cH, 2poz-a1-m1-cC_2poz-a1-m1-cH, 2poz-a1-m1-cG_2poz-a1-m1-cH
21 1nx8-a1-m2-cA 248 48 0.1609 0.0565 0.2917 8.5 1nx8-a1-m2-cA_1nx8-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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