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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLDEGQPAYAPGL
YTVHLSSFKVGQFGSLMIDRLRLVPAK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1gvp-a1-m2-cA 87 87 1.0000 1.0000 1.0000 5.66e-61 1gvp-a1-m1-cA_1gvp-a1-m2-cA
2 1gvp-a1-m1-cA 87 87 1.0000 1.0000 1.0000 5.66e-61 1gvp-a1-m1-cA_1gvp-a1-m2-cA
3 2gvb-a1-m1-cB 87 87 0.9885 0.9885 0.9885 1.98e-60 2gvb-a1-m1-cA_2gvb-a1-m1-cB
4 2gvb-a1-m1-cA 87 87 0.9885 0.9885 0.9885 1.98e-60 2gvb-a1-m1-cA_2gvb-a1-m1-cB
5 3d8k-a1-m1-cC 341 67 0.2299 0.0587 0.2985 0.10 3d8k-a1-m1-cB_3d8k-a1-m1-cC, 3d8k-a1-m1-cD_3d8k-a1-m1-cC
6 3d8k-a1-m1-cD 336 67 0.2414 0.0625 0.3134 0.21 3d8k-a1-m1-cD_3d8k-a1-m1-cA, 3d8k-a1-m1-cD_3d8k-a1-m1-cC
7 3d8k-a1-m1-cB 339 67 0.2414 0.0619 0.3134 0.24 3d8k-a1-m1-cB_3d8k-a1-m1-cC
8 6j3g-a1-m1-cA 265 34 0.1494 0.0491 0.3824 1.3 6j3g-a1-m1-cB_6j3g-a1-m1-cA
9 6j3g-a1-m1-cB 257 34 0.1494 0.0506 0.3824 1.7 6j3g-a1-m1-cB_6j3g-a1-m1-cA
10 3tzq-a2-m1-cH 261 51 0.1724 0.0575 0.2941 1.8 3tzq-a2-m1-cE_3tzq-a2-m1-cH, 3tzq-a2-m1-cF_3tzq-a2-m1-cH, 3tzq-a2-m1-cG_3tzq-a2-m1-cH
11 3tzq-a2-m1-cF 261 51 0.1724 0.0575 0.2941 1.8 3tzq-a2-m1-cF_3tzq-a2-m1-cH
12 3tzq-a2-m1-cG 260 51 0.1724 0.0577 0.2941 1.8 3tzq-a2-m1-cG_3tzq-a2-m1-cH
13 3tzq-a2-m1-cE 260 51 0.1724 0.0577 0.2941 1.8 3tzq-a2-m1-cE_3tzq-a2-m1-cH
14 3d8k-a1-m1-cA 337 67 0.2299 0.0593 0.2985 2.5 3d8k-a1-m1-cD_3d8k-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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