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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVGGRAGSYESKLKEARDIAMDE
MKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1vr4-a1-m1-cC 99 99 1.0000 1.0000 1.0000 2.07e-65 1vr4-a1-m1-cB_1vr4-a1-m1-cC
2 2gtc-a1-m1-cE 97 102 0.9293 0.9485 0.9020 5.64e-50 2gtc-a1-m1-cD_2gtc-a1-m1-cE
3 2gtc-a1-m1-cD 97 102 0.9293 0.9485 0.9020 5.64e-50 2gtc-a1-m1-cD_2gtc-a1-m1-cE
4 1vr4-a1-m1-cB 82 99 0.8283 1.0000 0.8283 1.07e-47 1vr4-a1-m1-cB_1vr4-a1-m1-cC
5 1y2i-a1-m1-cE 106 99 0.5051 0.4717 0.5051 2.32e-29 1y2i-a1-m1-cD_1y2i-a1-m1-cE
6 1y2i-a1-m1-cD 106 99 0.5051 0.4717 0.5051 2.32e-29 1y2i-a1-m1-cD_1y2i-a1-m1-cE
7 5ofb-a1-m1-cA 534 79 0.2222 0.0412 0.2785 2.4 5ofb-a1-m1-cA_5ofb-a1-m1-cB
8 5ofb-a1-m1-cB 541 52 0.1616 0.0296 0.3077 5.2 5ofb-a1-m1-cA_5ofb-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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