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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
MKERQVCWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6pce-a1-m1-cB 70 60 1.0000 0.8571 1.0000 3.12e-39 6pce-a1-m1-cA_6pce-a1-m1-cB
2 6pce-a1-m1-cA 60 60 1.0000 1.0000 1.0000 5.26e-39 6pce-a1-m1-cA_6pce-a1-m1-cB
3 6pcf-a1-m2-cB 65 60 0.9833 0.9077 0.9833 1.17e-37 6pcf-a1-m2-cC_6pcf-a1-m2-cB
4 6pcf-a1-m1-cD 64 60 0.9833 0.9219 0.9833 1.35e-37 6pcf-a1-m2-cC_6pcf-a1-m1-cD
5 6pcf-a1-m2-cC 56 56 0.9167 0.9821 0.9821 1.47e-34 6pcf-a1-m2-cC_6pcf-a1-m1-cD, 6pcf-a1-m2-cC_6pcf-a1-m2-cB
6 8h8r-a1-m1-cU 75 45 0.2333 0.1867 0.3111 0.14 8h8r-a1-m1-cH_8h8r-a1-m1-cU
7 8h8r-a1-m1-cH 75 45 0.2333 0.1867 0.3111 0.14 8h8r-a1-m1-cH_8h8r-a1-m1-cU
8 5fr9-a3-m1-cA 319 18 0.1667 0.0313 0.5556 0.20 5fr9-a3-m1-cA_5fr9-a3-m1-cH
9 5fr9-a3-m1-cB 320 18 0.1667 0.0312 0.5556 0.20 5fr9-a3-m1-cB_5fr9-a3-m1-cH
10 5fr9-a3-m1-cH 321 18 0.1667 0.0312 0.5556 0.20 5fr9-a3-m1-cA_5fr9-a3-m1-cH, 5fr9-a3-m1-cB_5fr9-a3-m1-cH
11 6xbu-a1-m2-cA 605 18 0.1667 0.0165 0.5556 3.6 6xbu-a1-m1-cA_6xbu-a1-m2-cA
12 6xbu-a1-m1-cA 605 18 0.1667 0.0165 0.5556 3.6 6xbu-a1-m1-cA_6xbu-a1-m2-cA
13 6dww-a1-m2-cA 483 30 0.1833 0.0228 0.3667 3.8 6dww-a1-m1-cA_6dww-a1-m2-cA
14 6dww-a1-m1-cA 483 30 0.1833 0.0228 0.3667 3.8 6dww-a1-m1-cA_6dww-a1-m2-cA
15 4d1q-a1-m2-cB 505 30 0.1833 0.0218 0.3667 4.0 4d1q-a1-m2-cG_4d1q-a1-m2-cB
16 4d1q-a1-m2-cH 509 30 0.1833 0.0216 0.3667 4.1 4d1q-a1-m1-cH_4d1q-a1-m2-cH
17 4d1q-a1-m1-cH 509 30 0.1833 0.0216 0.3667 4.1 4d1q-a1-m1-cH_4d1q-a1-m2-cH
18 4d1q-a1-m2-cG 499 30 0.1833 0.0220 0.3667 4.1 4d1q-a1-m2-cG_4d1q-a1-m2-cB
19 3fnb-a1-m1-cA 364 41 0.1667 0.0275 0.2439 4.4 3fnb-a1-m1-cB_3fnb-a1-m1-cA
20 6f90-a1-m2-cA 714 47 0.2000 0.0168 0.2553 4.9 6f90-a1-m1-cA_6f90-a1-m2-cA
21 6f90-a1-m1-cA 714 47 0.2000 0.0168 0.2553 4.9 6f90-a1-m1-cA_6f90-a1-m2-cA
22 3wwj-a6-m1-cL 317 23 0.1833 0.0347 0.4783 4.9 3wwj-a6-m1-cL_3wwj-a6-m1-cJ
23 3wwj-a6-m1-cJ 318 23 0.1833 0.0346 0.4783 4.9 3wwj-a6-m1-cL_3wwj-a6-m1-cJ
24 7ebe-a2-m1-cH 533 29 0.1333 0.0150 0.2759 7.0 7ebe-a2-m1-cH_7ebe-a2-m1-cG
25 7ebe-a1-m1-cA 544 29 0.1333 0.0147 0.2759 7.1 7ebe-a1-m1-cD_7ebe-a1-m1-cA
26 7ebe-a2-m1-cG 535 29 0.1333 0.0150 0.2759 7.2 7ebe-a2-m1-cG_7ebe-a2-m1-cE, 7ebe-a2-m1-cH_7ebe-a2-m1-cG
27 7ebe-a1-m1-cD 541 29 0.1333 0.0148 0.2759 7.3 7ebe-a1-m1-cD_7ebe-a1-m1-cA
28 7ebe-a2-m1-cE 542 29 0.1333 0.0148 0.2759 7.3 7ebe-a2-m1-cG_7ebe-a2-m1-cE
29 3zdq-a1-m2-cA 570 22 0.1667 0.0175 0.4545 9.0 3zdq-a1-m1-cA_3zdq-a1-m2-cA
30 3zdq-a1-m1-cA 570 22 0.1667 0.0175 0.4545 9.0 3zdq-a1-m1-cA_3zdq-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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