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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
MKITSSNFATIATSENFAKLSVLPKNHREPIKGLFKSAVEQFSSARDFFKNENYSKELAE
KFNKEAVNEAVEKLQKAIDLAEKQGIQF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7msl-a1-m2-cA 88 88 1.0000 1.0000 1.0000 7.55e-59 7msl-a1-m1-cA_7msl-a1-m2-cA
2 7msl-a1-m1-cA 88 88 1.0000 1.0000 1.0000 7.55e-59 7msl-a1-m1-cA_7msl-a1-m2-cA
3 4mph-a1-m1-cB 184 20 0.1250 0.0598 0.5500 3.0 4mph-a1-m1-cA_4mph-a1-m1-cB
4 4mph-a1-m1-cA 181 20 0.1250 0.0608 0.5500 3.1 4mph-a1-m1-cA_4mph-a1-m1-cB
5 6opm-a1-m1-cD 333 48 0.1591 0.0420 0.2917 4.5 6opm-a1-m1-cA_6opm-a1-m1-cD, 6opm-a1-m1-cD_6opm-a1-m1-cC
6 6opm-a1-m1-cA 333 48 0.1591 0.0420 0.2917 4.5 6opm-a1-m1-cA_6opm-a1-m1-cD
7 6opm-a1-m1-cC 351 48 0.1591 0.0399 0.2917 5.0 6opm-a1-m1-cD_6opm-a1-m1-cC
8 3i7f-a1-m1-cA 485 82 0.2727 0.0495 0.2927 5.5 3i7f-a1-m1-cB_3i7f-a1-m1-cA
9 4a61-a1-m2-cA 309 77 0.2841 0.0809 0.3247 7.8 4a61-a1-m1-cA_4a61-a1-m2-cA
10 4a61-a1-m1-cA 309 77 0.2841 0.0809 0.3247 7.8 4a61-a1-m1-cA_4a61-a1-m2-cA
11 1wyz-a2-m1-cD 224 29 0.1477 0.0580 0.4483 9.9 1wyz-a2-m1-cB_1wyz-a2-m1-cD
12 1wyz-a2-m1-cB 224 29 0.1477 0.0580 0.4483 9.9 1wyz-a2-m1-cB_1wyz-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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