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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
MKKIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFDFLPKVKIEVVVRDEDVEKVVETI
VKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQAI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2eg2-a2-m9-cA 95 95 1.0000 1.0000 1.0000 3.87e-59 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
2 2eg2-a2-m6-cA 95 95 1.0000 1.0000 1.0000 3.87e-59 2eg2-a2-m6-cA_2eg2-a2-m9-cA
3 2eg2-a2-m5-cA 95 95 1.0000 1.0000 1.0000 3.87e-59 2eg2-a2-m5-cA_2eg2-a2-m9-cA
4 2gw8-a1-m3-cA 99 98 0.6632 0.6364 0.6429 4.60e-40 2gw8-a1-m2-cA_2gw8-a1-m3-cA
5 2gw8-a1-m2-cA 99 98 0.6632 0.6364 0.6429 4.60e-40 2gw8-a1-m2-cA_2gw8-a1-m3-cA
6 5l9n-a1-m3-cA 92 89 0.6842 0.7065 0.7303 8.23e-40 5l9n-a1-m2-cA_5l9n-a1-m3-cA
7 5l9n-a1-m2-cA 92 89 0.6842 0.7065 0.7303 8.23e-40 5l9n-a1-m2-cA_5l9n-a1-m3-cA
8 2pii-a1-m3-cA 112 112 0.7053 0.5982 0.5982 1.32e-36 2pii-a1-m2-cA_2pii-a1-m3-cA
9 2pii-a1-m2-cA 112 112 0.7053 0.5982 0.5982 1.32e-36 2pii-a1-m2-cA_2pii-a1-m3-cA
10 1ul3-a3-m5-cA 95 95 0.6421 0.6421 0.6421 9.08e-36 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
11 4c3l-a1-m3-cA 89 89 0.6211 0.6629 0.6629 3.42e-35 4c3l-a1-m2-cA_4c3l-a1-m3-cA
12 4c3l-a1-m2-cA 89 89 0.6211 0.6629 0.6629 3.42e-35 4c3l-a1-m2-cA_4c3l-a1-m3-cA
13 4cnz-a1-m1-cB 100 100 0.6105 0.5800 0.5800 6.92e-35 4cnz-a1-m1-cA_4cnz-a1-m1-cB
14 4cnz-a1-m1-cA 100 100 0.6105 0.5800 0.5800 6.92e-35 4cnz-a1-m1-cA_4cnz-a1-m1-cB
15 3bzq-a1-m3-cA 99 97 0.5684 0.5455 0.5567 4.94e-34 3bzq-a1-m2-cA_3bzq-a1-m3-cA
16 3bzq-a1-m2-cA 99 97 0.5684 0.5455 0.5567 4.94e-34 3bzq-a1-m2-cA_3bzq-a1-m3-cA
17 1ul3-a3-m4-cB 94 95 0.6421 0.6489 0.6421 7.80e-34 1ul3-a3-m4-cB_1ul3-a3-m5-cA
18 1ul3-a3-m1-cC 94 95 0.6421 0.6489 0.6421 7.80e-34 1ul3-a3-m1-cC_1ul3-a3-m5-cA
19 2o66-a2-m2-cC 106 93 0.5579 0.5000 0.5699 8.69e-34 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
20 7p4v-a1-m3-cA 113 112 0.6421 0.5398 0.5446 1.04e-33 7p4v-a1-m2-cA_7p4v-a1-m3-cA
21 7p4v-a1-m2-cA 113 112 0.6421 0.5398 0.5446 1.04e-33 7p4v-a1-m2-cA_7p4v-a1-m3-cA
22 3lf0-a1-m1-cC 101 100 0.5684 0.5347 0.5400 1.04e-33 3lf0-a1-m1-cC_3lf0-a1-m1-cB
23 3n5b-a1-m3-cA 112 112 0.6526 0.5536 0.5536 2.02e-33 3n5b-a1-m2-cA_3n5b-a1-m3-cA
24 3n5b-a1-m2-cA 112 112 0.6526 0.5536 0.5536 2.02e-33 3n5b-a1-m2-cA_3n5b-a1-m3-cA
25 2xul-a1-m1-cA 106 105 0.6421 0.5755 0.5810 2.11e-33 2xul-a1-m1-cA_2xul-a1-m1-cC
26 2xul-a1-m1-cC 107 106 0.6421 0.5701 0.5755 3.84e-33 2xul-a1-m1-cA_2xul-a1-m1-cC
27 4co2-a2-m3-cA 112 112 0.6105 0.5179 0.5179 4.58e-33 4co2-a2-m2-cA_4co2-a2-m3-cA
28 4co2-a2-m2-cA 112 112 0.6105 0.5179 0.5179 4.58e-33 4co2-a2-m2-cA_4co2-a2-m3-cA
29 2gnk-a2-m3-cA 95 95 0.5684 0.5684 0.5684 7.93e-33 2gnk-a2-m2-cA_2gnk-a2-m3-cA
30 2gnk-a2-m2-cA 95 95 0.5684 0.5684 0.5684 7.93e-33 2gnk-a2-m2-cA_2gnk-a2-m3-cA
31 1ul3-a2-m3-cD 95 92 0.6211 0.6211 0.6413 1.39e-32 1ul3-a2-m2-cD_1ul3-a2-m3-cD
32 1ul3-a2-m2-cD 95 92 0.6211 0.6211 0.6413 1.39e-32 1ul3-a2-m2-cD_1ul3-a2-m3-cD
33 2o66-a2-m2-cA 107 95 0.5474 0.4860 0.5474 2.63e-32 2o66-a2-m2-cC_2o66-a2-m2-cA
34 2o66-a2-m1-cA 107 95 0.5474 0.4860 0.5474 2.63e-32 2o66-a2-m2-cC_2o66-a2-m1-cA
35 1hwu-a3-m2-cD 99 99 0.6737 0.6465 0.6465 3.99e-32 1hwu-a3-m1-cA_1hwu-a3-m2-cD
36 1hwu-a3-m1-cA 99 99 0.6737 0.6465 0.6465 4.17e-32 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
37 7p50-a1-m1-cC 115 112 0.6211 0.5130 0.5268 6.26e-32 7p50-a1-m1-cB_7p50-a1-m1-cC
38 7p50-a1-m1-cB 115 112 0.6211 0.5130 0.5268 6.26e-32 7p50-a1-m1-cB_7p50-a1-m1-cC
39 3lf0-a1-m1-cB 112 111 0.5684 0.4821 0.4865 6.77e-32 3lf0-a1-m1-cC_3lf0-a1-m1-cB
40 3ncp-a6-m5-cD 99 99 0.6421 0.6162 0.6162 1.64e-31 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
41 3ncp-a6-m4-cD 99 99 0.6421 0.6162 0.6162 1.64e-31 3ncp-a6-m4-cD_3ncp-a6-m5-cD
42 3ncp-a6-m4-cC 100 99 0.6421 0.6100 0.6162 2.01e-31 3ncp-a6-m5-cD_3ncp-a6-m4-cC
43 2rd5-a1-m3-cD 126 110 0.5474 0.4127 0.4727 1.05e-29 2rd5-a1-m2-cD_2rd5-a1-m3-cD
44 2rd5-a1-m2-cD 126 110 0.5474 0.4127 0.4727 1.05e-29 2rd5-a1-m2-cD_2rd5-a1-m3-cD
45 2nuu-a4-m2-cK 112 112 0.5684 0.4821 0.4821 3.81e-29 2nuu-a4-m1-cH_2nuu-a4-m2-cK
46 2nuu-a4-m1-cH 112 112 0.5684 0.4821 0.4821 3.81e-29 2nuu-a4-m1-cH_2nuu-a4-m2-cK
47 2ns1-a1-m3-cB 113 112 0.5684 0.4779 0.4821 4.09e-29 2ns1-a1-m2-cB_2ns1-a1-m3-cB
48 2ns1-a1-m2-cB 113 112 0.5684 0.4779 0.4821 4.09e-29 2ns1-a1-m2-cB_2ns1-a1-m3-cB
49 1hwu-a3-m2-cF 91 95 0.6316 0.6593 0.6316 1.96e-28 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
50 7p52-a1-m3-cA 111 111 0.5895 0.5045 0.5045 6.01e-28 7p52-a1-m2-cA_7p52-a1-m3-cA
51 7p52-a1-m2-cA 111 111 0.5895 0.5045 0.5045 6.01e-28 7p52-a1-m2-cA_7p52-a1-m3-cA
52 3t9z-a2-m1-cF 94 89 0.5474 0.5532 0.5843 2.61e-27 3t9z-a2-m1-cD_3t9z-a2-m1-cF
53 3t9z-a2-m1-cD 93 89 0.5474 0.5591 0.5843 3.23e-27 3t9z-a2-m1-cD_3t9z-a2-m1-cF
54 1hwu-a3-m2-cE 84 88 0.6000 0.6786 0.6477 1.48e-26 1hwu-a3-m2-cE_1hwu-a3-m2-cF
55 3ta2-a2-m5-cB 109 106 0.5579 0.4862 0.5000 5.04e-24 3ta2-a2-m4-cB_3ta2-a2-m5-cB
56 3ta2-a2-m4-cB 109 106 0.5579 0.4862 0.5000 5.04e-24 3ta2-a2-m4-cB_3ta2-a2-m5-cB
57 3l7p-a1-m1-cB 88 88 0.4947 0.5341 0.5341 1.21e-23 3l7p-a1-m1-cB_3l7p-a1-m1-cF
58 1v3r-a1-m1-cA 92 92 0.4842 0.5000 0.5000 1.40e-23 1v3r-a1-m1-cC_1v3r-a1-m1-cA
59 3l7p-a1-m1-cF 88 87 0.4842 0.5227 0.5287 7.62e-23 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
60 7o4x-a1-m3-cA 103 100 0.4526 0.4175 0.4300 1.06e-21 7o4x-a1-m2-cA_7o4x-a1-m3-cA
61 7o4x-a1-m2-cA 103 100 0.4526 0.4175 0.4300 1.06e-21 7o4x-a1-m2-cA_7o4x-a1-m3-cA
62 1v3r-a1-m1-cC 90 89 0.4737 0.5000 0.5056 2.23e-21 1v3r-a1-m1-cC_1v3r-a1-m1-cA
63 3l7p-a1-m1-cC 91 91 0.4842 0.5055 0.5055 6.91e-21 3l7p-a1-m1-cF_3l7p-a1-m1-cC
64 1ufl-a2-m2-cC 99 99 0.4842 0.4646 0.4646 1.17e-20 1ufl-a2-m2-cC_1ufl-a2-m1-cA
65 1ufl-a2-m1-cA 108 106 0.4737 0.4167 0.4245 7.51e-19 1ufl-a2-m2-cC_1ufl-a2-m1-cA
66 4ozn-a1-m1-cC 113 105 0.5053 0.4248 0.4571 1.64e-18 4ozn-a1-m1-cC_4ozn-a1-m1-cA
67 4ozn-a1-m1-cA 116 109 0.5053 0.4138 0.4404 7.34e-18 4ozn-a1-m1-cC_4ozn-a1-m1-cA
68 4usj-a1-m3-cD 142 110 0.4737 0.3169 0.4091 2.65e-17 4usj-a1-m2-cD_4usj-a1-m3-cD
69 4usj-a1-m2-cD 142 110 0.4737 0.3169 0.4091 2.65e-17 4usj-a1-m2-cD_4usj-a1-m3-cD
70 4r25-a1-m3-cA 114 112 0.3789 0.3158 0.3214 8.74e-14 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 112 0.3789 0.3158 0.3214 8.74e-14 4r25-a1-m2-cA_4r25-a1-m3-cA
72 3d5p-a1-m1-cB 131 46 0.1474 0.1069 0.3043 0.98 3d5p-a1-m1-cA_3d5p-a1-m1-cB
73 3d5p-a1-m1-cA 131 46 0.1474 0.1069 0.3043 0.98 3d5p-a1-m1-cA_3d5p-a1-m1-cB
74 7qpg-a1-m1-cS 2208 89 0.2526 0.0109 0.2697 1.1 7qpg-a1-m1-cR_7qpg-a1-m1-cS
75 7qpg-a1-m1-cR 2208 89 0.2526 0.0109 0.2697 1.1 7qpg-a1-m1-cR_7qpg-a1-m1-cS
76 4rww-a1-m1-cB 106 99 0.2526 0.2264 0.2424 1.2 4rww-a1-m1-cC_4rww-a1-m1-cB
77 5vmk-a1-m1-cC 415 45 0.1474 0.0337 0.3111 2.9 5vmk-a1-m1-cC_5vmk-a1-m1-cB
78 2dcl-a1-m2-cA 99 44 0.1895 0.1818 0.4091 3.5 2dcl-a1-m1-cA_2dcl-a1-m2-cA
79 2dcl-a1-m1-cA 99 44 0.1895 0.1818 0.4091 3.5 2dcl-a1-m1-cA_2dcl-a1-m2-cA
80 1nly-a1-m3-cB 317 41 0.1474 0.0442 0.3415 4.9 1nly-a1-m3-cA_1nly-a1-m3-cB
81 1nly-a1-m3-cA 317 41 0.1474 0.0442 0.3415 4.9 1nly-a1-m3-cA_1nly-a1-m3-cB
82 1g6o-a2-m6-cB 317 41 0.1474 0.0442 0.3415 4.9 1g6o-a2-m3-cB_1g6o-a2-m6-cB
83 1g6o-a2-m3-cB 317 41 0.1474 0.0442 0.3415 4.9 1g6o-a2-m3-cB_1g6o-a2-m6-cB
84 2pyy-a1-m1-cC 212 60 0.1895 0.0849 0.3000 9.3 2pyy-a1-m1-cC_2pyy-a1-m1-cB
85 2pyy-a1-m1-cA 212 60 0.1895 0.0849 0.3000 9.3 2pyy-a1-m1-cA_2pyy-a1-m1-cB
86 2pyy-a1-m1-cB 217 60 0.1895 0.0829 0.3000 9.9 2pyy-a1-m1-cA_2pyy-a1-m1-cB, 2pyy-a1-m1-cC_2pyy-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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