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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
MKKIEAIIRSDKLEDLKAALVQSGFIKGMTISQVLGFGTLLAKVKVEIVAHDAAVEEMIT
TISQAVKTGEVGDGKIFVSPVDEIVRIR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3l7p-a1-m1-cB 88 88 1.0000 1.0000 1.0000 4.15e-57 3l7p-a1-m1-cB_3l7p-a1-m1-cF
2 3l7p-a1-m1-cF 88 87 0.9886 0.9886 1.0000 3.13e-56 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
3 3l7p-a1-m1-cC 91 91 0.9886 0.9560 0.9560 9.30e-53 3l7p-a1-m1-cF_3l7p-a1-m1-cC
4 4c3l-a1-m3-cA 89 88 0.5909 0.5843 0.5909 4.54e-27 4c3l-a1-m2-cA_4c3l-a1-m3-cA
5 4c3l-a1-m2-cA 89 88 0.5909 0.5843 0.5909 4.54e-27 4c3l-a1-m2-cA_4c3l-a1-m3-cA
6 2xul-a1-m1-cA 106 97 0.6023 0.5000 0.5464 1.08e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
7 2xul-a1-m1-cC 107 98 0.6023 0.4953 0.5408 1.61e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
8 1ul3-a2-m3-cD 95 89 0.5455 0.5053 0.5393 7.26e-26 1ul3-a2-m2-cD_1ul3-a2-m3-cD
9 1ul3-a2-m2-cD 95 89 0.5455 0.5053 0.5393 7.26e-26 1ul3-a2-m2-cD_1ul3-a2-m3-cD
10 1ul3-a3-m4-cB 94 88 0.5341 0.5000 0.5341 5.52e-25 1ul3-a3-m4-cB_1ul3-a3-m5-cA
11 1ul3-a3-m1-cC 94 88 0.5341 0.5000 0.5341 5.52e-25 1ul3-a3-m1-cC_1ul3-a3-m5-cA
12 1ul3-a3-m5-cA 95 88 0.5341 0.4947 0.5341 6.06e-25 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
13 3ncp-a6-m5-cD 99 91 0.5795 0.5152 0.5604 7.23e-25 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
14 3ncp-a6-m4-cD 99 91 0.5795 0.5152 0.5604 7.23e-25 3ncp-a6-m4-cD_3ncp-a6-m5-cD
15 3ncp-a6-m4-cC 100 91 0.5795 0.5100 0.5604 7.27e-25 3ncp-a6-m5-cD_3ncp-a6-m4-cC
16 3n5b-a1-m3-cA 112 104 0.5568 0.4375 0.4712 4.09e-24 3n5b-a1-m2-cA_3n5b-a1-m3-cA
17 3n5b-a1-m2-cA 112 104 0.5568 0.4375 0.4712 4.09e-24 3n5b-a1-m2-cA_3n5b-a1-m3-cA
18 2eg2-a2-m9-cA 95 88 0.5341 0.4947 0.5341 1.12e-23 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
19 2eg2-a2-m6-cA 95 88 0.5341 0.4947 0.5341 1.12e-23 2eg2-a2-m6-cA_2eg2-a2-m9-cA
20 2eg2-a2-m5-cA 95 88 0.5341 0.4947 0.5341 1.12e-23 2eg2-a2-m5-cA_2eg2-a2-m9-cA
21 2gw8-a1-m3-cA 99 90 0.5341 0.4747 0.5222 1.27e-23 2gw8-a1-m2-cA_2gw8-a1-m3-cA
22 2gw8-a1-m2-cA 99 90 0.5341 0.4747 0.5222 1.27e-23 2gw8-a1-m2-cA_2gw8-a1-m3-cA
23 7p4v-a1-m3-cA 113 104 0.5227 0.4071 0.4423 2.49e-22 7p4v-a1-m2-cA_7p4v-a1-m3-cA
24 7p4v-a1-m2-cA 113 104 0.5227 0.4071 0.4423 2.49e-22 7p4v-a1-m2-cA_7p4v-a1-m3-cA
25 2o66-a2-m2-cC 106 86 0.4659 0.3868 0.4767 6.02e-22 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
26 3bzq-a1-m3-cA 99 89 0.4432 0.3939 0.4382 3.81e-21 3bzq-a1-m2-cA_3bzq-a1-m3-cA
27 3bzq-a1-m2-cA 99 89 0.4432 0.3939 0.4382 3.81e-21 3bzq-a1-m2-cA_3bzq-a1-m3-cA
28 2o66-a2-m2-cA 107 88 0.4773 0.3925 0.4773 4.50e-21 2o66-a2-m2-cC_2o66-a2-m2-cA
29 2o66-a2-m1-cA 107 88 0.4773 0.3925 0.4773 4.50e-21 2o66-a2-m2-cC_2o66-a2-m1-cA
30 3t9z-a2-m1-cD 93 88 0.5000 0.4731 0.5000 6.31e-21 3t9z-a2-m1-cD_3t9z-a2-m1-cF
31 3t9z-a2-m1-cF 94 88 0.5000 0.4681 0.5000 6.49e-21 3t9z-a2-m1-cD_3t9z-a2-m1-cF
32 3lf0-a1-m1-cC 101 92 0.4432 0.3861 0.4239 9.00e-21 3lf0-a1-m1-cC_3lf0-a1-m1-cB
33 7p50-a1-m1-cC 115 104 0.4886 0.3739 0.4135 1.43e-20 7p50-a1-m1-cB_7p50-a1-m1-cC
34 7p50-a1-m1-cB 115 104 0.4886 0.3739 0.4135 1.43e-20 7p50-a1-m1-cB_7p50-a1-m1-cC
35 5l9n-a1-m3-cA 92 88 0.5000 0.4783 0.5000 2.31e-20 5l9n-a1-m2-cA_5l9n-a1-m3-cA
36 5l9n-a1-m2-cA 92 88 0.5000 0.4783 0.5000 2.31e-20 5l9n-a1-m2-cA_5l9n-a1-m3-cA
37 7p52-a1-m3-cA 111 103 0.5000 0.3964 0.4272 1.42e-19 7p52-a1-m2-cA_7p52-a1-m3-cA
38 7p52-a1-m2-cA 111 103 0.5000 0.3964 0.4272 1.42e-19 7p52-a1-m2-cA_7p52-a1-m3-cA
39 3lf0-a1-m1-cB 112 103 0.4432 0.3482 0.3786 8.06e-19 3lf0-a1-m1-cC_3lf0-a1-m1-cB
40 2pii-a1-m3-cA 112 104 0.5114 0.4018 0.4327 1.36e-18 2pii-a1-m2-cA_2pii-a1-m3-cA
41 2pii-a1-m2-cA 112 104 0.5114 0.4018 0.4327 1.36e-18 2pii-a1-m2-cA_2pii-a1-m3-cA
42 2rd5-a1-m3-cD 126 103 0.4773 0.3333 0.4078 1.75e-18 2rd5-a1-m2-cD_2rd5-a1-m3-cD
43 2rd5-a1-m2-cD 126 103 0.4773 0.3333 0.4078 1.75e-18 2rd5-a1-m2-cD_2rd5-a1-m3-cD
44 3ta2-a2-m5-cB 109 104 0.5000 0.4037 0.4231 2.56e-18 3ta2-a2-m4-cB_3ta2-a2-m5-cB
45 3ta2-a2-m4-cB 109 104 0.5000 0.4037 0.4231 2.56e-18 3ta2-a2-m4-cB_3ta2-a2-m5-cB
46 2gnk-a2-m3-cA 95 88 0.4432 0.4105 0.4432 3.51e-18 2gnk-a2-m2-cA_2gnk-a2-m3-cA
47 2gnk-a2-m2-cA 95 88 0.4432 0.4105 0.4432 3.51e-18 2gnk-a2-m2-cA_2gnk-a2-m3-cA
48 4cnz-a1-m1-cB 100 92 0.4659 0.4100 0.4457 6.38e-18 4cnz-a1-m1-cA_4cnz-a1-m1-cB
49 4cnz-a1-m1-cA 100 92 0.4659 0.4100 0.4457 6.38e-18 4cnz-a1-m1-cA_4cnz-a1-m1-cB
50 1v3r-a1-m1-cC 90 88 0.4545 0.4444 0.4545 1.04e-16 1v3r-a1-m1-cC_1v3r-a1-m1-cA
51 1ufl-a2-m2-cC 99 94 0.4659 0.4141 0.4362 1.14e-16 1ufl-a2-m2-cC_1ufl-a2-m1-cA
52 1v3r-a1-m1-cA 92 88 0.4545 0.4348 0.4545 1.15e-16 1v3r-a1-m1-cC_1v3r-a1-m1-cA
53 7o4x-a1-m3-cA 103 92 0.4432 0.3786 0.4239 3.43e-16 7o4x-a1-m2-cA_7o4x-a1-m3-cA
54 7o4x-a1-m2-cA 103 92 0.4432 0.3786 0.4239 3.43e-16 7o4x-a1-m2-cA_7o4x-a1-m3-cA
55 4co2-a2-m3-cA 112 104 0.4659 0.3661 0.3942 4.88e-16 4co2-a2-m2-cA_4co2-a2-m3-cA
56 4co2-a2-m2-cA 112 104 0.4659 0.3661 0.3942 4.88e-16 4co2-a2-m2-cA_4co2-a2-m3-cA
57 2ns1-a1-m3-cB 113 104 0.4432 0.3451 0.3750 7.24e-16 2ns1-a1-m2-cB_2ns1-a1-m3-cB
58 2ns1-a1-m2-cB 113 104 0.4432 0.3451 0.3750 7.24e-16 2ns1-a1-m2-cB_2ns1-a1-m3-cB
59 2nuu-a4-m2-cK 112 104 0.4432 0.3482 0.3750 7.54e-16 2nuu-a4-m1-cH_2nuu-a4-m2-cK
60 2nuu-a4-m1-cH 112 104 0.4432 0.3482 0.3750 7.54e-16 2nuu-a4-m1-cH_2nuu-a4-m2-cK
61 1ufl-a2-m1-cA 108 104 0.4659 0.3796 0.3942 4.34e-15 1ufl-a2-m2-cC_1ufl-a2-m1-cA
62 1hwu-a3-m1-cA 99 91 0.4432 0.3939 0.4286 8.05e-15 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
63 1hwu-a3-m2-cD 99 91 0.4318 0.3838 0.4176 1.65e-13 1hwu-a3-m1-cA_1hwu-a3-m2-cD
64 4ozn-a1-m1-cC 113 97 0.4545 0.3540 0.4124 4.84e-12 4ozn-a1-m1-cC_4ozn-a1-m1-cA
65 1hwu-a3-m2-cE 84 88 0.4091 0.4286 0.4091 9.53e-12 1hwu-a3-m2-cE_1hwu-a3-m2-cF
66 1hwu-a3-m2-cF 91 88 0.4091 0.3956 0.4091 1.11e-11 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
67 4usj-a1-m3-cD 142 103 0.4318 0.2676 0.3689 1.64e-11 4usj-a1-m2-cD_4usj-a1-m3-cD
68 4usj-a1-m2-cD 142 103 0.4318 0.2676 0.3689 1.64e-11 4usj-a1-m2-cD_4usj-a1-m3-cD
69 4ozn-a1-m1-cA 116 101 0.4545 0.3448 0.3960 2.01e-11 4ozn-a1-m1-cC_4ozn-a1-m1-cA
70 4r25-a1-m3-cA 114 104 0.3636 0.2807 0.3077 2.58e-08 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 104 0.3636 0.2807 0.3077 2.58e-08 4r25-a1-m2-cA_4r25-a1-m3-cA
72 4wk1-a1-m3-cA 92 87 0.3068 0.2935 0.3103 0.015 4wk1-a1-m2-cA_4wk1-a1-m3-cA
73 4wk1-a1-m2-cA 92 87 0.3068 0.2935 0.3103 0.015 4wk1-a1-m2-cA_4wk1-a1-m3-cA
74 4d3h-a1-m1-cC 101 94 0.3182 0.2772 0.2979 0.19 4d3h-a1-m1-cC_4d3h-a1-m1-cA, 4d3h-a1-m1-cC_4d3h-a1-m1-cB
75 4d3h-a1-m1-cA 103 96 0.3068 0.2621 0.2812 0.58 4d3h-a1-m1-cC_4d3h-a1-m1-cA
76 4gek-a1-m1-cA 230 51 0.1932 0.0739 0.3333 0.60 4gek-a1-m1-cA_4gek-a1-m1-cG
77 4gek-a1-m1-cG 231 39 0.1477 0.0563 0.3333 0.76 4gek-a1-m1-cA_4gek-a1-m1-cG
78 2rdy-a1-m1-cB 769 38 0.1705 0.0195 0.3947 1.0 2rdy-a1-m1-cA_2rdy-a1-m1-cB
79 2rdy-a1-m1-cA 769 38 0.1705 0.0195 0.3947 1.0 2rdy-a1-m1-cA_2rdy-a1-m1-cB
80 4d3h-a1-m1-cB 104 98 0.3068 0.2596 0.2755 1.1 4d3h-a1-m1-cC_4d3h-a1-m1-cB
81 6bz0-a2-m1-cD 469 82 0.2955 0.0554 0.3171 1.6 6bz0-a2-m1-cC_6bz0-a2-m1-cD
82 6bz0-a2-m1-cC 468 82 0.2955 0.0556 0.3171 1.6 6bz0-a2-m1-cC_6bz0-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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