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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MKKIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQEVTLLPKVKLEIVVKDDAVEEV
IGLIVNSAFTGSPGDGKIFIIPVEDVVRIRTGERGDDSL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ncp-a6-m4-cC 100 99 1.0000 0.9900 1.0000 3.00e-65 3ncp-a6-m5-cD_3ncp-a6-m4-cC
2 3ncp-a6-m5-cD 99 99 1.0000 1.0000 1.0000 3.03e-65 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
3 3ncp-a6-m4-cD 99 99 1.0000 1.0000 1.0000 3.03e-65 3ncp-a6-m4-cD_3ncp-a6-m5-cD
4 7p4v-a1-m3-cA 113 112 0.5859 0.5133 0.5179 2.37e-32 7p4v-a1-m2-cA_7p4v-a1-m3-cA
5 7p4v-a1-m2-cA 113 112 0.5859 0.5133 0.5179 2.37e-32 7p4v-a1-m2-cA_7p4v-a1-m3-cA
6 2eg2-a2-m9-cA 95 99 0.6162 0.6421 0.6162 1.71e-31 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
7 2eg2-a2-m6-cA 95 99 0.6162 0.6421 0.6162 1.71e-31 2eg2-a2-m6-cA_2eg2-a2-m9-cA
8 2eg2-a2-m5-cA 95 99 0.6162 0.6421 0.6162 1.71e-31 2eg2-a2-m5-cA_2eg2-a2-m9-cA
9 3t9z-a2-m1-cF 94 93 0.5859 0.6170 0.6237 2.54e-31 3t9z-a2-m1-cD_3t9z-a2-m1-cF
10 3t9z-a2-m1-cD 93 93 0.5859 0.6237 0.6237 3.01e-31 3t9z-a2-m1-cD_3t9z-a2-m1-cF
11 3ta2-a2-m5-cB 109 106 0.6061 0.5505 0.5660 9.59e-31 3ta2-a2-m4-cB_3ta2-a2-m5-cB
12 3ta2-a2-m4-cB 109 106 0.6061 0.5505 0.5660 9.59e-31 3ta2-a2-m4-cB_3ta2-a2-m5-cB
13 7p52-a1-m3-cA 111 111 0.5859 0.5225 0.5225 1.26e-30 7p52-a1-m2-cA_7p52-a1-m3-cA
14 7p52-a1-m2-cA 111 111 0.5859 0.5225 0.5225 1.26e-30 7p52-a1-m2-cA_7p52-a1-m3-cA
15 7p50-a1-m1-cC 115 112 0.5657 0.4870 0.5000 3.08e-30 7p50-a1-m1-cB_7p50-a1-m1-cC
16 7p50-a1-m1-cB 115 112 0.5657 0.4870 0.5000 3.08e-30 7p50-a1-m1-cB_7p50-a1-m1-cC
17 2gw8-a1-m3-cA 99 99 0.5657 0.5657 0.5657 8.27e-30 2gw8-a1-m2-cA_2gw8-a1-m3-cA
18 2gw8-a1-m2-cA 99 99 0.5657 0.5657 0.5657 8.27e-30 2gw8-a1-m2-cA_2gw8-a1-m3-cA
19 2o66-a2-m2-cA 107 96 0.5152 0.4766 0.5312 6.43e-27 2o66-a2-m2-cC_2o66-a2-m2-cA
20 2o66-a2-m1-cA 107 96 0.5152 0.4766 0.5312 6.43e-27 2o66-a2-m2-cC_2o66-a2-m1-cA
21 2xul-a1-m1-cA 106 105 0.5556 0.5189 0.5238 2.48e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
22 2xul-a1-m1-cC 107 106 0.5556 0.5140 0.5189 2.90e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
23 3lf0-a1-m1-cC 101 100 0.4848 0.4752 0.4800 3.34e-26 3lf0-a1-m1-cC_3lf0-a1-m1-cB
24 3bzq-a1-m3-cA 99 99 0.4747 0.4747 0.4747 6.56e-26 3bzq-a1-m2-cA_3bzq-a1-m3-cA
25 3bzq-a1-m2-cA 99 99 0.4747 0.4747 0.4747 6.56e-26 3bzq-a1-m2-cA_3bzq-a1-m3-cA
26 2o66-a2-m2-cC 106 96 0.5051 0.4717 0.5208 1.75e-25 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
27 3n5b-a1-m3-cA 112 112 0.5556 0.4911 0.4911 4.34e-25 3n5b-a1-m2-cA_3n5b-a1-m3-cA
28 3n5b-a1-m2-cA 112 112 0.5556 0.4911 0.4911 4.34e-25 3n5b-a1-m2-cA_3n5b-a1-m3-cA
29 3l7p-a1-m1-cB 88 91 0.5152 0.5795 0.5604 8.13e-25 3l7p-a1-m1-cB_3l7p-a1-m1-cF
30 1ul3-a2-m3-cD 95 94 0.5253 0.5474 0.5532 9.03e-25 1ul3-a2-m2-cD_1ul3-a2-m3-cD
31 1ul3-a2-m2-cD 95 94 0.5253 0.5474 0.5532 9.03e-25 1ul3-a2-m2-cD_1ul3-a2-m3-cD
32 3l7p-a1-m1-cC 91 91 0.5152 0.5604 0.5604 9.64e-25 3l7p-a1-m1-cF_3l7p-a1-m1-cC
33 3lf0-a1-m1-cB 112 111 0.4848 0.4286 0.4324 1.15e-24 3lf0-a1-m1-cC_3lf0-a1-m1-cB
34 2pii-a1-m3-cA 112 112 0.5354 0.4732 0.4732 1.79e-24 2pii-a1-m2-cA_2pii-a1-m3-cA
35 2pii-a1-m2-cA 112 112 0.5354 0.4732 0.4732 1.79e-24 2pii-a1-m2-cA_2pii-a1-m3-cA
36 2rd5-a1-m3-cD 126 110 0.5253 0.4127 0.4727 2.27e-24 2rd5-a1-m2-cD_2rd5-a1-m3-cD
37 2rd5-a1-m2-cD 126 110 0.5253 0.4127 0.4727 2.27e-24 2rd5-a1-m2-cD_2rd5-a1-m3-cD
38 5l9n-a1-m3-cA 92 96 0.5152 0.5543 0.5312 2.62e-24 5l9n-a1-m2-cA_5l9n-a1-m3-cA
39 5l9n-a1-m2-cA 92 96 0.5152 0.5543 0.5312 2.62e-24 5l9n-a1-m2-cA_5l9n-a1-m3-cA
40 3l7p-a1-m1-cF 88 90 0.5051 0.5682 0.5556 5.16e-24 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
41 4c3l-a1-m3-cA 89 93 0.5253 0.5843 0.5591 1.23e-23 4c3l-a1-m2-cA_4c3l-a1-m3-cA
42 4c3l-a1-m2-cA 89 93 0.5253 0.5843 0.5591 1.23e-23 4c3l-a1-m2-cA_4c3l-a1-m3-cA
43 1ul3-a3-m5-cA 95 99 0.5051 0.5263 0.5051 3.92e-23 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
44 1ul3-a3-m4-cB 94 99 0.5051 0.5319 0.5051 4.25e-23 1ul3-a3-m4-cB_1ul3-a3-m5-cA
45 1ul3-a3-m1-cC 94 99 0.5051 0.5319 0.5051 4.25e-23 1ul3-a3-m1-cC_1ul3-a3-m5-cA
46 4cnz-a1-m1-cB 100 100 0.4747 0.4700 0.4700 5.06e-23 4cnz-a1-m1-cA_4cnz-a1-m1-cB
47 4cnz-a1-m1-cA 100 100 0.4747 0.4700 0.4700 5.06e-23 4cnz-a1-m1-cA_4cnz-a1-m1-cB
48 7o4x-a1-m3-cA 103 100 0.4545 0.4369 0.4500 9.90e-23 7o4x-a1-m2-cA_7o4x-a1-m3-cA
49 7o4x-a1-m2-cA 103 100 0.4545 0.4369 0.4500 9.90e-23 7o4x-a1-m2-cA_7o4x-a1-m3-cA
50 2gnk-a2-m3-cA 95 99 0.4343 0.4526 0.4343 7.40e-22 2gnk-a2-m2-cA_2gnk-a2-m3-cA
51 2gnk-a2-m2-cA 95 99 0.4343 0.4526 0.4343 7.40e-22 2gnk-a2-m2-cA_2gnk-a2-m3-cA
52 4co2-a2-m3-cA 112 112 0.4747 0.4196 0.4196 1.02e-21 4co2-a2-m2-cA_4co2-a2-m3-cA
53 4co2-a2-m2-cA 112 112 0.4747 0.4196 0.4196 1.02e-21 4co2-a2-m2-cA_4co2-a2-m3-cA
54 2ns1-a1-m3-cB 113 112 0.4444 0.3894 0.3929 1.98e-21 2ns1-a1-m2-cB_2ns1-a1-m3-cB
55 2ns1-a1-m2-cB 113 112 0.4444 0.3894 0.3929 1.98e-21 2ns1-a1-m2-cB_2ns1-a1-m3-cB
56 2nuu-a4-m2-cK 112 112 0.4444 0.3929 0.3929 1.99e-21 2nuu-a4-m1-cH_2nuu-a4-m2-cK
57 2nuu-a4-m1-cH 112 112 0.4444 0.3929 0.3929 1.99e-21 2nuu-a4-m1-cH_2nuu-a4-m2-cK
58 1hwu-a3-m1-cA 99 99 0.5152 0.5152 0.5152 1.99e-21 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
59 1hwu-a3-m2-cD 99 99 0.5051 0.5051 0.5051 3.51e-20 1hwu-a3-m1-cA_1hwu-a3-m2-cD
60 4ozn-a1-m1-cC 113 105 0.4848 0.4248 0.4571 2.83e-19 4ozn-a1-m1-cC_4ozn-a1-m1-cA
61 4ozn-a1-m1-cA 116 109 0.4848 0.4138 0.4404 1.14e-18 4ozn-a1-m1-cC_4ozn-a1-m1-cA
62 1hwu-a3-m2-cF 91 99 0.4848 0.5275 0.4848 6.01e-18 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
63 1ufl-a2-m2-cC 99 96 0.4646 0.4646 0.4792 1.04e-17 1ufl-a2-m2-cC_1ufl-a2-m1-cA
64 1v3r-a1-m1-cC 90 93 0.4545 0.5000 0.4839 1.71e-17 1v3r-a1-m1-cC_1v3r-a1-m1-cA
65 1v3r-a1-m1-cA 92 93 0.4545 0.4891 0.4839 5.34e-17 1v3r-a1-m1-cC_1v3r-a1-m1-cA
66 1ufl-a2-m1-cA 108 106 0.4747 0.4352 0.4434 9.94e-17 1ufl-a2-m2-cC_1ufl-a2-m1-cA
67 4usj-a1-m3-cD 142 107 0.4646 0.3239 0.4299 1.33e-16 4usj-a1-m2-cD_4usj-a1-m3-cD
68 4usj-a1-m2-cD 142 107 0.4646 0.3239 0.4299 1.33e-16 4usj-a1-m2-cD_4usj-a1-m3-cD
69 1hwu-a3-m2-cE 84 92 0.4545 0.5357 0.4891 1.21e-15 1hwu-a3-m2-cE_1hwu-a3-m2-cF
70 4r25-a1-m3-cA 114 112 0.3737 0.3246 0.3304 1.93e-12 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 112 0.3737 0.3246 0.3304 1.93e-12 4r25-a1-m2-cA_4r25-a1-m3-cA
72 8aur-a1-m1-cC 233 46 0.1414 0.0601 0.3043 2.1 8aur-a1-m1-cA_8aur-a1-m1-cC, 8aur-a1-m1-cB_8aur-a1-m1-cC
73 8aur-a1-m1-cB 233 46 0.1414 0.0601 0.3043 2.1 8aur-a1-m1-cB_8aur-a1-m1-cC
74 8aur-a1-m1-cA 233 46 0.1414 0.0601 0.3043 2.1 8aur-a1-m1-cA_8aur-a1-m1-cC
75 2vaj-a1-m2-cA 93 30 0.1111 0.1183 0.3667 2.2 2vaj-a1-m1-cA_2vaj-a1-m2-cA
76 2vaj-a1-m1-cA 93 30 0.1111 0.1183 0.3667 2.2 2vaj-a1-m1-cA_2vaj-a1-m2-cA
77 5hei-a4-m1-cH 246 24 0.1010 0.0407 0.4167 3.8 5hei-a4-m1-cG_5hei-a4-m1-cH
78 5hei-a4-m1-cG 246 24 0.1010 0.0407 0.4167 3.8 5hei-a4-m1-cG_5hei-a4-m1-cH
79 1qrd-a3-m3-cB 273 58 0.1818 0.0659 0.3103 4.5 1qrd-a3-m1-cB_1qrd-a3-m3-cB
80 1qrd-a3-m1-cB 273 58 0.1818 0.0659 0.3103 4.5 1qrd-a3-m1-cB_1qrd-a3-m3-cB
81 1qrd-a1-m1-cB 273 58 0.1818 0.0659 0.3103 4.5 1qrd-a1-m1-cA_1qrd-a1-m1-cB
82 1qrd-a1-m1-cA 273 58 0.1818 0.0659 0.3103 4.5 1qrd-a1-m1-cA_1qrd-a1-m1-cB
83 1rqg-a1-m2-cA 606 55 0.1616 0.0264 0.2909 6.2 1rqg-a1-m1-cA_1rqg-a1-m2-cA
84 1rqg-a1-m1-cA 606 55 0.1616 0.0264 0.2909 6.2 1rqg-a1-m1-cA_1rqg-a1-m2-cA
85 2emq-a1-m1-cA 135 52 0.1616 0.1185 0.3077 7.0 2emq-a1-m1-cB_2emq-a1-m1-cA
86 2emq-a1-m1-cB 133 52 0.1616 0.1203 0.3077 7.2 2emq-a1-m1-cB_2emq-a1-m1-cA
87 1i9g-a2-m4-cA 264 52 0.1616 0.0606 0.3077 9.0 1i9g-a2-m2-cA_1i9g-a2-m4-cA, 1i9g-a2-m3-cA_1i9g-a2-m4-cA
88 1i9g-a2-m3-cA 264 52 0.1616 0.0606 0.3077 9.0 1i9g-a2-m3-cA_1i9g-a2-m4-cA
89 1i9g-a2-m2-cA 264 52 0.1616 0.0606 0.3077 9.0 1i9g-a2-m2-cA_1i9g-a2-m4-cA

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Reference:
Jacob Schwartz et al.

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