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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=78)
MKKIEVYAQPDCPPCVIVKEFLKHNNVAYEEFDVKKDAAARNRLLYDYDSYSTPTVVIDG
EVVAGFQIEKLQQLLNIE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3zit-a1-m1-cB 78 78 1.0000 1.0000 1.0000 8.18e-54 3zit-a1-m1-cA_3zit-a1-m1-cB
2 3zit-a1-m1-cA 74 74 0.9487 1.0000 1.0000 9.08e-51 3zit-a1-m1-cA_3zit-a1-m1-cB
3 7c12-a1-m1-cD 73 71 0.3846 0.4110 0.4225 6.58e-13 7c12-a1-m1-cA_7c12-a1-m1-cD, 7c12-a1-m1-cB_7c12-a1-m1-cD
4 7c12-a1-m1-cB 73 71 0.3846 0.4110 0.4225 6.58e-13 7c12-a1-m1-cB_7c12-a1-m1-cD
5 7c12-a1-m1-cA 73 71 0.3846 0.4110 0.4225 6.58e-13 7c12-a1-m1-cA_7c12-a1-m1-cD
6 7c13-a1-m2-cC 71 69 0.3718 0.4085 0.4203 3.26e-12 7c13-a1-m1-cB_7c13-a1-m2-cC, 7c13-a1-m2-cB_7c13-a1-m2-cC
7 7c13-a1-m2-cB 71 69 0.3718 0.4085 0.4203 3.26e-12 7c13-a1-m1-cB_7c13-a1-m2-cB, 7c13-a1-m2-cB_7c13-a1-m2-cC
8 7c13-a1-m1-cB 71 69 0.3718 0.4085 0.4203 3.26e-12 7c13-a1-m1-cB_7c13-a1-m2-cB, 7c13-a1-m1-cB_7c13-a1-m2-cC
9 1r7h-a1-m1-cB 74 72 0.2949 0.3108 0.3194 1.40e-07 1r7h-a1-m1-cA_1r7h-a1-m1-cB
10 1r7h-a1-m1-cA 74 72 0.2949 0.3108 0.3194 1.40e-07 1r7h-a1-m1-cA_1r7h-a1-m1-cB
11 4k8m-a1-m2-cA 84 73 0.2308 0.2143 0.2466 1.55e-04 4k8m-a1-m1-cA_4k8m-a1-m2-cA
12 4k8m-a1-m1-cA 84 73 0.2308 0.2143 0.2466 1.55e-04 4k8m-a1-m1-cA_4k8m-a1-m2-cA
13 1nm3-a1-m2-cB 232 64 0.2051 0.0690 0.2500 0.021 1nm3-a1-m1-cA_1nm3-a1-m2-cB, 1nm3-a1-m2-cA_1nm3-a1-m2-cB
14 1nm3-a1-m2-cA 230 64 0.2051 0.0696 0.2500 0.022 1nm3-a1-m2-cA_1nm3-a1-m2-cB
15 1nm3-a1-m1-cA 230 64 0.2051 0.0696 0.2500 0.022 1nm3-a1-m1-cA_1nm3-a1-m2-cB
16 7pwe-a1-m1-cB 191 80 0.3077 0.1257 0.3000 0.032 7pwe-a1-m1-cB_7pwe-a1-m1-cA
17 7pwe-a1-m1-cA 192 80 0.3077 0.1250 0.3000 0.032 7pwe-a1-m1-cB_7pwe-a1-m1-cA
18 2mzc-a1-m1-cB 92 65 0.1923 0.1630 0.2308 0.11 2mzc-a1-m1-cA_2mzc-a1-m1-cB
19 2mzc-a1-m1-cA 92 65 0.1923 0.1630 0.2308 0.11 2mzc-a1-m1-cA_2mzc-a1-m1-cB
20 4mnn-a2-m2-cA 165 64 0.2179 0.1030 0.2656 1.1 4mnn-a2-m1-cA_4mnn-a2-m2-cA
21 4mnn-a2-m1-cA 165 64 0.2179 0.1030 0.2656 1.1 4mnn-a2-m1-cA_4mnn-a2-m2-cA
22 3gv1-a2-m1-cB 134 47 0.1667 0.0970 0.2766 1.5 3gv1-a2-m1-cA_3gv1-a2-m1-cB
23 3gv1-a2-m1-cA 134 47 0.1667 0.0970 0.2766 1.5 3gv1-a2-m1-cA_3gv1-a2-m1-cB
24 1ygz-a4-m7-cD 168 51 0.2436 0.1131 0.3725 2.3 1ygz-a4-m1-cC_1ygz-a4-m7-cD, 1ygz-a4-m7-cC_1ygz-a4-m7-cD
25 1ygz-a4-m7-cC 168 51 0.2436 0.1131 0.3725 2.3 1ygz-a4-m7-cC_1ygz-a4-m7-cD
26 1ygz-a4-m1-cC 168 51 0.2436 0.1131 0.3725 2.3 1ygz-a4-m1-cC_1ygz-a4-m7-cD
27 1ygz-a3-m5-cA 168 51 0.2436 0.1131 0.3725 2.3 1ygz-a3-m4-cA_1ygz-a3-m5-cA
28 1ygz-a3-m4-cA 168 51 0.2436 0.1131 0.3725 2.3 1ygz-a3-m4-cA_1ygz-a3-m5-cA
29 1ygz-a1-m1-cE 168 51 0.2436 0.1131 0.3725 2.3 1ygz-a1-m1-cD_1ygz-a1-m1-cE
30 1ygz-a1-m1-cD 168 51 0.2436 0.1131 0.3725 2.3 1ygz-a1-m1-cD_1ygz-a1-m1-cE
31 3r1m-a1-m8-cA 356 39 0.1923 0.0421 0.3846 3.5 3r1m-a1-m2-cA_3r1m-a1-m8-cA, 3r1m-a1-m4-cA_3r1m-a1-m8-cA, 3r1m-a1-m6-cA_3r1m-a1-m8-cA
32 3r1m-a1-m6-cA 356 39 0.1923 0.0421 0.3846 3.5 3r1m-a1-m6-cA_3r1m-a1-m8-cA
33 3r1m-a1-m4-cA 356 39 0.1923 0.0421 0.3846 3.5 3r1m-a1-m4-cA_3r1m-a1-m8-cA
34 3r1m-a1-m2-cA 356 39 0.1923 0.0421 0.3846 3.5 3r1m-a1-m2-cA_3r1m-a1-m8-cA
35 4yh2-a1-m1-cC 220 65 0.2564 0.0909 0.3077 5.2 4yh2-a1-m1-cC_4yh2-a1-m1-cA
36 4yh2-a1-m1-cA 221 65 0.2564 0.0905 0.3077 5.5 4yh2-a1-m1-cC_4yh2-a1-m1-cA
37 5lf5-a1-m2-cA 484 21 0.1282 0.0207 0.4762 8.6 5lf5-a1-m1-cA_5lf5-a1-m2-cA
38 5lf5-a1-m1-cA 484 21 0.1282 0.0207 0.4762 8.6 5lf5-a1-m1-cA_5lf5-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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