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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=52)
MKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLAL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4gof-a1-m1-cB 52 52 1.0000 1.0000 1.0000 1.04e-32 4gof-a1-m1-cA_4gof-a1-m1-cB
2 4gof-a1-m1-cA 52 52 1.0000 1.0000 1.0000 1.04e-32 4gof-a1-m1-cA_4gof-a1-m1-cB
3 4cpg-a1-m1-cB 69 51 0.9808 0.7391 1.0000 6.22e-32 4cpg-a1-m1-cA_4cpg-a1-m1-cB
4 4cpg-a1-m1-cA 69 51 0.9808 0.7391 1.0000 6.22e-32 4cpg-a1-m1-cA_4cpg-a1-m1-cB
5 3zdm-a1-m1-cE 50 41 0.2500 0.2600 0.3171 0.009 3zdm-a1-m1-cE_3zdm-a1-m1-cA, 3zdm-a1-m1-cE_3zdm-a1-m1-cD
6 2lxc-a1-m1-cC 74 45 0.2692 0.1892 0.3111 0.019 2lxc-a1-m1-cB_2lxc-a1-m1-cC
7 2lxc-a1-m1-cB 74 45 0.2692 0.1892 0.3111 0.019 2lxc-a1-m1-cB_2lxc-a1-m1-cC
8 3zdm-a1-m1-cD 69 45 0.2692 0.2029 0.3111 0.019 3zdm-a1-m1-cA_3zdm-a1-m1-cD, 3zdm-a1-m1-cE_3zdm-a1-m1-cD
9 3zdm-a1-m1-cA 69 45 0.2692 0.2029 0.3111 0.019 3zdm-a1-m1-cA_3zdm-a1-m1-cD, 3zdm-a1-m1-cE_3zdm-a1-m1-cA
10 6eb4-a2-m1-cD 140 25 0.2308 0.0857 0.4800 5.3 6eb4-a2-m1-cC_6eb4-a2-m1-cD
11 6eb4-a2-m1-cC 140 25 0.2308 0.0857 0.4800 5.3 6eb4-a2-m1-cC_6eb4-a2-m1-cD
12 6ut7-a1-m1-cN 414 27 0.1923 0.0242 0.3704 5.9 6ut7-a1-m1-cG_6ut7-a1-m1-cN
13 6ut7-a1-m1-cG 414 27 0.1923 0.0242 0.3704 5.9 6ut7-a1-m1-cG_6ut7-a1-m1-cN

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Reference:
Jacob Schwartz et al.

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