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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
MKKVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFEFLQKLKIEIVVDEGQVDMVVDKL
VSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEAI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1ul3-a3-m5-cA 95 95 1.0000 1.0000 1.0000 1.88e-61 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
2 1ul3-a3-m4-cB 94 95 0.9895 1.0000 0.9895 6.93e-59 1ul3-a3-m4-cB_1ul3-a3-m5-cA
3 1ul3-a3-m1-cC 94 95 0.9895 1.0000 0.9895 6.93e-59 1ul3-a3-m1-cC_1ul3-a3-m5-cA
4 1ul3-a2-m3-cD 95 95 0.9789 0.9789 0.9789 4.88e-58 1ul3-a2-m2-cD_1ul3-a2-m3-cD
5 1ul3-a2-m2-cD 95 95 0.9789 0.9789 0.9789 4.88e-58 1ul3-a2-m2-cD_1ul3-a2-m3-cD
6 3n5b-a1-m3-cA 112 112 0.8737 0.7411 0.7411 2.06e-51 3n5b-a1-m2-cA_3n5b-a1-m3-cA
7 3n5b-a1-m2-cA 112 112 0.8737 0.7411 0.7411 2.06e-51 3n5b-a1-m2-cA_3n5b-a1-m3-cA
8 4c3l-a1-m3-cA 89 89 0.8000 0.8539 0.8539 6.94e-51 4c3l-a1-m2-cA_4c3l-a1-m3-cA
9 4c3l-a1-m2-cA 89 89 0.8000 0.8539 0.8539 6.94e-51 4c3l-a1-m2-cA_4c3l-a1-m3-cA
10 2xul-a1-m1-cA 106 105 0.8316 0.7453 0.7524 3.57e-50 2xul-a1-m1-cA_2xul-a1-m1-cC
11 2xul-a1-m1-cC 107 106 0.8316 0.7383 0.7453 5.77e-50 2xul-a1-m1-cA_2xul-a1-m1-cC
12 2eg2-a2-m9-cA 95 95 0.6421 0.6421 0.6421 9.08e-36 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
13 2eg2-a2-m6-cA 95 95 0.6421 0.6421 0.6421 9.08e-36 2eg2-a2-m6-cA_2eg2-a2-m9-cA
14 2eg2-a2-m5-cA 95 95 0.6421 0.6421 0.6421 9.08e-36 2eg2-a2-m5-cA_2eg2-a2-m9-cA
15 3bzq-a1-m3-cA 99 97 0.5684 0.5455 0.5567 4.02e-35 3bzq-a1-m2-cA_3bzq-a1-m3-cA
16 3bzq-a1-m2-cA 99 97 0.5684 0.5455 0.5567 4.02e-35 3bzq-a1-m2-cA_3bzq-a1-m3-cA
17 3lf0-a1-m1-cC 101 100 0.5684 0.5347 0.5400 7.95e-35 3lf0-a1-m1-cC_3lf0-a1-m1-cB
18 5l9n-a1-m3-cA 92 91 0.5895 0.6087 0.6154 2.25e-33 5l9n-a1-m2-cA_5l9n-a1-m3-cA
19 5l9n-a1-m2-cA 92 91 0.5895 0.6087 0.6154 2.25e-33 5l9n-a1-m2-cA_5l9n-a1-m3-cA
20 3lf0-a1-m1-cB 112 111 0.5684 0.4821 0.4865 5.34e-33 3lf0-a1-m1-cC_3lf0-a1-m1-cB
21 2gw8-a1-m3-cA 99 98 0.5684 0.5455 0.5510 1.32e-31 2gw8-a1-m2-cA_2gw8-a1-m3-cA
22 2gw8-a1-m2-cA 99 98 0.5684 0.5455 0.5510 1.32e-31 2gw8-a1-m2-cA_2gw8-a1-m3-cA
23 4cnz-a1-m1-cB 100 100 0.5789 0.5500 0.5500 9.06e-30 4cnz-a1-m1-cA_4cnz-a1-m1-cB
24 4cnz-a1-m1-cA 100 100 0.5789 0.5500 0.5500 9.06e-30 4cnz-a1-m1-cA_4cnz-a1-m1-cB
25 2pii-a1-m3-cA 112 112 0.6105 0.5179 0.5179 9.50e-30 2pii-a1-m2-cA_2pii-a1-m3-cA
26 2pii-a1-m2-cA 112 112 0.6105 0.5179 0.5179 9.50e-30 2pii-a1-m2-cA_2pii-a1-m3-cA
27 2o66-a2-m2-cC 106 93 0.5368 0.4811 0.5484 9.75e-30 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
28 2o66-a2-m2-cA 107 95 0.5368 0.4766 0.5368 3.45e-29 2o66-a2-m2-cC_2o66-a2-m2-cA
29 2o66-a2-m1-cA 107 95 0.5368 0.4766 0.5368 3.45e-29 2o66-a2-m2-cC_2o66-a2-m1-cA
30 2gnk-a2-m3-cA 95 95 0.5263 0.5263 0.5263 1.80e-28 2gnk-a2-m2-cA_2gnk-a2-m3-cA
31 2gnk-a2-m2-cA 95 95 0.5263 0.5263 0.5263 1.80e-28 2gnk-a2-m2-cA_2gnk-a2-m3-cA
32 4co2-a2-m3-cA 112 112 0.5789 0.4911 0.4911 6.05e-28 4co2-a2-m2-cA_4co2-a2-m3-cA
33 4co2-a2-m2-cA 112 112 0.5789 0.4911 0.4911 6.05e-28 4co2-a2-m2-cA_4co2-a2-m3-cA
34 7p4v-a1-m3-cA 113 112 0.5895 0.4956 0.5000 6.50e-28 7p4v-a1-m2-cA_7p4v-a1-m3-cA
35 7p4v-a1-m2-cA 113 112 0.5895 0.4956 0.5000 6.50e-28 7p4v-a1-m2-cA_7p4v-a1-m3-cA
36 1hwu-a3-m2-cD 99 99 0.5895 0.5657 0.5657 9.22e-28 1hwu-a3-m1-cA_1hwu-a3-m2-cD
37 3t9z-a2-m1-cF 94 94 0.5474 0.5532 0.5532 1.48e-27 3t9z-a2-m1-cD_3t9z-a2-m1-cF
38 1hwu-a3-m1-cA 99 99 0.5789 0.5556 0.5556 3.62e-27 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
39 3t9z-a2-m1-cD 93 91 0.5368 0.5484 0.5604 3.98e-27 3t9z-a2-m1-cD_3t9z-a2-m1-cF
40 2rd5-a1-m3-cD 126 110 0.5368 0.4048 0.4636 1.16e-26 2rd5-a1-m2-cD_2rd5-a1-m3-cD
41 2rd5-a1-m2-cD 126 110 0.5368 0.4048 0.4636 1.16e-26 2rd5-a1-m2-cD_2rd5-a1-m3-cD
42 1v3r-a1-m1-cA 92 91 0.5053 0.5217 0.5275 5.65e-26 1v3r-a1-m1-cC_1v3r-a1-m1-cA
43 7p52-a1-m3-cA 111 111 0.6000 0.5135 0.5135 7.78e-26 7p52-a1-m2-cA_7p52-a1-m3-cA
44 7p52-a1-m2-cA 111 111 0.6000 0.5135 0.5135 7.78e-26 7p52-a1-m2-cA_7p52-a1-m3-cA
45 7p50-a1-m1-cC 115 112 0.5789 0.4783 0.4911 1.55e-25 7p50-a1-m1-cB_7p50-a1-m1-cC
46 7p50-a1-m1-cB 115 112 0.5789 0.4783 0.4911 1.55e-25 7p50-a1-m1-cB_7p50-a1-m1-cC
47 3l7p-a1-m1-cB 88 88 0.4947 0.5341 0.5341 6.54e-25 3l7p-a1-m1-cB_3l7p-a1-m1-cF
48 2nuu-a4-m2-cK 112 112 0.5263 0.4464 0.4464 1.43e-24 2nuu-a4-m1-cH_2nuu-a4-m2-cK
49 2nuu-a4-m1-cH 112 112 0.5263 0.4464 0.4464 1.43e-24 2nuu-a4-m1-cH_2nuu-a4-m2-cK
50 2ns1-a1-m3-cB 113 112 0.5263 0.4425 0.4464 1.57e-24 2ns1-a1-m2-cB_2ns1-a1-m3-cB
51 2ns1-a1-m2-cB 113 112 0.5263 0.4425 0.4464 1.57e-24 2ns1-a1-m2-cB_2ns1-a1-m3-cB
52 1hwu-a3-m2-cF 91 95 0.5474 0.5714 0.5474 2.79e-24 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
53 3l7p-a1-m1-cF 88 87 0.4842 0.5227 0.5287 4.39e-24 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
54 1v3r-a1-m1-cC 90 91 0.4947 0.5222 0.5165 1.70e-23 1v3r-a1-m1-cC_1v3r-a1-m1-cA
55 3ta2-a2-m5-cB 109 108 0.5368 0.4679 0.4722 2.37e-23 3ta2-a2-m4-cB_3ta2-a2-m5-cB
56 3ta2-a2-m4-cB 109 108 0.5368 0.4679 0.4722 2.37e-23 3ta2-a2-m4-cB_3ta2-a2-m5-cB
57 3ncp-a6-m5-cD 99 99 0.5263 0.5051 0.5051 3.76e-23 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
58 3ncp-a6-m4-cD 99 99 0.5263 0.5051 0.5051 3.76e-23 3ncp-a6-m4-cD_3ncp-a6-m5-cD
59 3ncp-a6-m4-cC 100 99 0.5263 0.5000 0.5051 4.70e-23 3ncp-a6-m5-cD_3ncp-a6-m4-cC
60 1ufl-a2-m2-cC 99 98 0.5053 0.4848 0.4898 4.78e-23 1ufl-a2-m2-cC_1ufl-a2-m1-cA
61 1hwu-a3-m2-cE 84 88 0.5263 0.5952 0.5682 5.15e-23 1hwu-a3-m2-cE_1hwu-a3-m2-cF
62 3l7p-a1-m1-cC 91 91 0.4947 0.5165 0.5165 2.39e-22 3l7p-a1-m1-cF_3l7p-a1-m1-cC
63 1ufl-a2-m1-cA 108 108 0.5053 0.4444 0.4444 1.80e-21 1ufl-a2-m2-cC_1ufl-a2-m1-cA
64 4usj-a1-m3-cD 142 110 0.5053 0.3380 0.4364 6.86e-18 4usj-a1-m2-cD_4usj-a1-m3-cD
65 4usj-a1-m2-cD 142 110 0.5053 0.3380 0.4364 6.86e-18 4usj-a1-m2-cD_4usj-a1-m3-cD
66 7o4x-a1-m3-cA 103 100 0.4000 0.3689 0.3800 1.12e-15 7o4x-a1-m2-cA_7o4x-a1-m3-cA
67 7o4x-a1-m2-cA 103 100 0.4000 0.3689 0.3800 1.12e-15 7o4x-a1-m2-cA_7o4x-a1-m3-cA
68 4ozn-a1-m1-cC 113 105 0.4842 0.4071 0.4381 5.58e-15 4ozn-a1-m1-cC_4ozn-a1-m1-cA
69 4ozn-a1-m1-cA 116 109 0.4842 0.3966 0.4220 2.15e-14 4ozn-a1-m1-cC_4ozn-a1-m1-cA
70 4r25-a1-m3-cA 114 112 0.4000 0.3333 0.3393 1.90e-13 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 112 0.4000 0.3333 0.3393 1.90e-13 4r25-a1-m2-cA_4r25-a1-m3-cA
72 4yd9-a1-m1-cb 1656 92 0.2421 0.0139 0.2500 0.68 4yd9-a1-m1-cA_4yd9-a1-m1-cb
73 4yd9-a1-m1-cA 1656 92 0.2421 0.0139 0.2500 0.68 4yd9-a1-m1-cA_4yd9-a1-m1-cb
74 3ndn-a1-m1-cD 400 65 0.2105 0.0500 0.3077 0.75 3ndn-a1-m1-cA_3ndn-a1-m1-cD, 3ndn-a1-m1-cB_3ndn-a1-m1-cD, 3ndn-a1-m1-cC_3ndn-a1-m1-cD
75 3ndn-a1-m1-cC 400 65 0.2105 0.0500 0.3077 0.75 3ndn-a1-m1-cC_3ndn-a1-m1-cD
76 3ndn-a1-m1-cB 400 65 0.2105 0.0500 0.3077 0.75 3ndn-a1-m1-cB_3ndn-a1-m1-cD
77 3ndn-a1-m1-cA 400 65 0.2105 0.0500 0.3077 0.75 3ndn-a1-m1-cA_3ndn-a1-m1-cD
78 7tcp-a1-m1-cG 341 36 0.1263 0.0352 0.3333 7.1 7tcp-a1-m1-cE_7tcp-a1-m1-cG
79 7tcp-a1-m1-cE 341 36 0.1263 0.0352 0.3333 7.1 7tcp-a1-m1-cE_7tcp-a1-m1-cG
80 6zw0-a1-m1-cB 299 41 0.1368 0.0435 0.3171 8.4 6zw0-a1-m1-cA_6zw0-a1-m1-cB
81 6zw0-a1-m1-cA 299 41 0.1368 0.0435 0.3171 8.4 6zw0-a1-m1-cA_6zw0-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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