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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
MKKVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFFLQKLKIEIVVDEGQVDMVVDKLV
SAARTGEIGDGKIFISPVDSVVRIRTGEKDTEAI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1ul3-a3-m4-cB 94 94 1.0000 1.0000 1.0000 9.82e-61 1ul3-a3-m4-cB_1ul3-a3-m5-cA
2 1ul3-a3-m1-cC 94 94 1.0000 1.0000 1.0000 9.82e-61 1ul3-a3-m1-cC_1ul3-a3-m5-cA
3 1ul3-a3-m5-cA 95 95 1.0000 0.9895 0.9895 6.86e-59 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
4 1ul3-a2-m3-cD 95 95 0.9787 0.9684 0.9684 3.69e-57 1ul3-a2-m2-cD_1ul3-a2-m3-cD
5 1ul3-a2-m2-cD 95 95 0.9787 0.9684 0.9684 3.69e-57 1ul3-a2-m2-cD_1ul3-a2-m3-cD
6 3n5b-a1-m3-cA 112 112 0.8723 0.7321 0.7321 1.41e-50 3n5b-a1-m2-cA_3n5b-a1-m3-cA
7 3n5b-a1-m2-cA 112 112 0.8723 0.7321 0.7321 1.41e-50 3n5b-a1-m2-cA_3n5b-a1-m3-cA
8 2xul-a1-m1-cA 106 105 0.8298 0.7358 0.7429 2.79e-49 2xul-a1-m1-cA_2xul-a1-m1-cC
9 2xul-a1-m1-cC 107 106 0.8298 0.7290 0.7358 4.04e-49 2xul-a1-m1-cA_2xul-a1-m1-cC
10 4c3l-a1-m3-cA 89 89 0.7979 0.8427 0.8427 2.29e-48 4c3l-a1-m2-cA_4c3l-a1-m3-cA
11 4c3l-a1-m2-cA 89 89 0.7979 0.8427 0.8427 2.29e-48 4c3l-a1-m2-cA_4c3l-a1-m3-cA
12 3bzq-a1-m3-cA 99 97 0.5745 0.5455 0.5567 1.21e-34 3bzq-a1-m2-cA_3bzq-a1-m3-cA
13 3bzq-a1-m2-cA 99 97 0.5745 0.5455 0.5567 1.21e-34 3bzq-a1-m2-cA_3bzq-a1-m3-cA
14 3lf0-a1-m1-cC 101 100 0.5745 0.5347 0.5400 2.24e-34 3lf0-a1-m1-cC_3lf0-a1-m1-cB
15 2eg2-a2-m9-cA 95 95 0.6489 0.6421 0.6421 7.72e-34 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
16 2eg2-a2-m6-cA 95 95 0.6489 0.6421 0.6421 7.72e-34 2eg2-a2-m6-cA_2eg2-a2-m9-cA
17 2eg2-a2-m5-cA 95 95 0.6489 0.6421 0.6421 7.72e-34 2eg2-a2-m5-cA_2eg2-a2-m9-cA
18 3lf0-a1-m1-cB 112 111 0.5745 0.4821 0.4865 1.41e-32 3lf0-a1-m1-cC_3lf0-a1-m1-cB
19 2gw8-a1-m3-cA 99 98 0.5745 0.5455 0.5510 2.69e-31 2gw8-a1-m2-cA_2gw8-a1-m3-cA
20 2gw8-a1-m2-cA 99 98 0.5745 0.5455 0.5510 2.69e-31 2gw8-a1-m2-cA_2gw8-a1-m3-cA
21 5l9n-a1-m3-cA 92 91 0.5957 0.6087 0.6154 2.96e-31 5l9n-a1-m2-cA_5l9n-a1-m3-cA
22 5l9n-a1-m2-cA 92 91 0.5957 0.6087 0.6154 2.96e-31 5l9n-a1-m2-cA_5l9n-a1-m3-cA
23 4cnz-a1-m1-cB 100 100 0.5851 0.5500 0.5500 9.83e-30 4cnz-a1-m1-cA_4cnz-a1-m1-cB
24 4cnz-a1-m1-cA 100 100 0.5851 0.5500 0.5500 9.83e-30 4cnz-a1-m1-cA_4cnz-a1-m1-cB
25 2pii-a1-m3-cA 112 112 0.6170 0.5179 0.5179 2.31e-29 2pii-a1-m2-cA_2pii-a1-m3-cA
26 2pii-a1-m2-cA 112 112 0.6170 0.5179 0.5179 2.31e-29 2pii-a1-m2-cA_2pii-a1-m3-cA
27 2o66-a2-m2-cC 106 93 0.5426 0.4811 0.5484 2.43e-29 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
28 2o66-a2-m2-cA 107 95 0.5426 0.4766 0.5368 5.61e-29 2o66-a2-m2-cC_2o66-a2-m2-cA
29 2o66-a2-m1-cA 107 95 0.5426 0.4766 0.5368 5.61e-29 2o66-a2-m2-cC_2o66-a2-m1-cA
30 4co2-a2-m3-cA 112 112 0.5851 0.4911 0.4911 7.01e-28 4co2-a2-m2-cA_4co2-a2-m3-cA
31 4co2-a2-m2-cA 112 112 0.5851 0.4911 0.4911 7.01e-28 4co2-a2-m2-cA_4co2-a2-m3-cA
32 7p4v-a1-m3-cA 113 112 0.5957 0.4956 0.5000 1.45e-27 7p4v-a1-m2-cA_7p4v-a1-m3-cA
33 7p4v-a1-m2-cA 113 112 0.5957 0.4956 0.5000 1.45e-27 7p4v-a1-m2-cA_7p4v-a1-m3-cA
34 2gnk-a2-m3-cA 95 95 0.5319 0.5263 0.5263 4.72e-27 2gnk-a2-m2-cA_2gnk-a2-m3-cA
35 2gnk-a2-m2-cA 95 95 0.5319 0.5263 0.5263 4.72e-27 2gnk-a2-m2-cA_2gnk-a2-m3-cA
36 1hwu-a3-m2-cD 99 99 0.5851 0.5556 0.5556 6.09e-27 1hwu-a3-m1-cA_1hwu-a3-m2-cD
37 1hwu-a3-m1-cA 99 99 0.5851 0.5556 0.5556 6.86e-27 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
38 2rd5-a1-m3-cD 126 110 0.5426 0.4048 0.4636 2.08e-26 2rd5-a1-m2-cD_2rd5-a1-m3-cD
39 2rd5-a1-m2-cD 126 110 0.5426 0.4048 0.4636 2.08e-26 2rd5-a1-m2-cD_2rd5-a1-m3-cD
40 3t9z-a2-m1-cF 94 94 0.5532 0.5532 0.5532 3.67e-26 3t9z-a2-m1-cD_3t9z-a2-m1-cF
41 3t9z-a2-m1-cD 93 91 0.5426 0.5484 0.5604 8.29e-26 3t9z-a2-m1-cD_3t9z-a2-m1-cF
42 7p52-a1-m3-cA 111 111 0.6170 0.5225 0.5225 8.62e-26 7p52-a1-m2-cA_7p52-a1-m3-cA
43 7p52-a1-m2-cA 111 111 0.6170 0.5225 0.5225 8.62e-26 7p52-a1-m2-cA_7p52-a1-m3-cA
44 1v3r-a1-m1-cC 90 90 0.5000 0.5222 0.5222 2.41e-25 1v3r-a1-m1-cC_1v3r-a1-m1-cA
45 7p50-a1-m1-cC 115 112 0.5851 0.4783 0.4911 4.39e-25 7p50-a1-m1-cB_7p50-a1-m1-cC
46 7p50-a1-m1-cB 115 112 0.5851 0.4783 0.4911 4.39e-25 7p50-a1-m1-cB_7p50-a1-m1-cC
47 3l7p-a1-m1-cB 88 88 0.5000 0.5341 0.5341 5.90e-25 3l7p-a1-m1-cB_3l7p-a1-m1-cF
48 1hwu-a3-m2-cF 91 94 0.5532 0.5714 0.5532 1.89e-24 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
49 2nuu-a4-m2-cK 112 112 0.5319 0.4464 0.4464 2.08e-24 2nuu-a4-m1-cH_2nuu-a4-m2-cK
50 2nuu-a4-m1-cH 112 112 0.5319 0.4464 0.4464 2.08e-24 2nuu-a4-m1-cH_2nuu-a4-m2-cK
51 2ns1-a1-m3-cB 113 112 0.5319 0.4425 0.4464 2.33e-24 2ns1-a1-m2-cB_2ns1-a1-m3-cB
52 2ns1-a1-m2-cB 113 112 0.5319 0.4425 0.4464 2.33e-24 2ns1-a1-m2-cB_2ns1-a1-m3-cB
53 3l7p-a1-m1-cF 88 87 0.4894 0.5227 0.5287 3.96e-24 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
54 1v3r-a1-m1-cA 92 91 0.5106 0.5217 0.5275 9.29e-24 1v3r-a1-m1-cC_1v3r-a1-m1-cA
55 1hwu-a3-m2-cE 84 87 0.5319 0.5952 0.5747 3.73e-23 1hwu-a3-m2-cE_1hwu-a3-m2-cF
56 3ncp-a6-m5-cD 99 99 0.5319 0.5051 0.5051 4.04e-23 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
57 3ncp-a6-m4-cD 99 99 0.5319 0.5051 0.5051 4.04e-23 3ncp-a6-m4-cD_3ncp-a6-m5-cD
58 3ncp-a6-m4-cC 100 99 0.5319 0.5000 0.5051 4.06e-23 3ncp-a6-m5-cD_3ncp-a6-m4-cC
59 3ta2-a2-m5-cB 109 108 0.5426 0.4679 0.4722 6.37e-23 3ta2-a2-m4-cB_3ta2-a2-m5-cB
60 3ta2-a2-m4-cB 109 108 0.5426 0.4679 0.4722 6.37e-23 3ta2-a2-m4-cB_3ta2-a2-m5-cB
61 3l7p-a1-m1-cC 91 91 0.5000 0.5165 0.5165 2.08e-22 3l7p-a1-m1-cF_3l7p-a1-m1-cC
62 1ufl-a2-m2-cC 99 98 0.5000 0.4747 0.4796 2.61e-22 1ufl-a2-m2-cC_1ufl-a2-m1-cA
63 1ufl-a2-m1-cA 108 108 0.5000 0.4352 0.4352 9.90e-21 1ufl-a2-m2-cC_1ufl-a2-m1-cA
64 4usj-a1-m3-cD 142 110 0.5000 0.3310 0.4273 3.98e-18 4usj-a1-m2-cD_4usj-a1-m3-cD
65 4usj-a1-m2-cD 142 110 0.5000 0.3310 0.4273 3.98e-18 4usj-a1-m2-cD_4usj-a1-m3-cD
66 7o4x-a1-m3-cA 103 100 0.4255 0.3883 0.4000 1.56e-15 7o4x-a1-m2-cA_7o4x-a1-m3-cA
67 7o4x-a1-m2-cA 103 100 0.4255 0.3883 0.4000 1.56e-15 7o4x-a1-m2-cA_7o4x-a1-m3-cA
68 4r25-a1-m3-cA 114 112 0.4362 0.3596 0.3661 8.32e-15 4r25-a1-m2-cA_4r25-a1-m3-cA
69 4r25-a1-m2-cA 114 112 0.4362 0.3596 0.3661 8.32e-15 4r25-a1-m2-cA_4r25-a1-m3-cA
70 4ozn-a1-m1-cC 113 105 0.4681 0.3894 0.4190 3.47e-14 4ozn-a1-m1-cC_4ozn-a1-m1-cA
71 4ozn-a1-m1-cA 116 109 0.4681 0.3793 0.4037 1.41e-13 4ozn-a1-m1-cC_4ozn-a1-m1-cA
72 4yd9-a1-m1-cb 1656 90 0.2340 0.0133 0.2444 0.39 4yd9-a1-m1-cA_4yd9-a1-m1-cb
73 4yd9-a1-m1-cA 1656 90 0.2340 0.0133 0.2444 0.39 4yd9-a1-m1-cA_4yd9-a1-m1-cb
74 4dxw-a1-m1-cC 199 35 0.1170 0.0553 0.3143 9.4 4dxw-a1-m1-cC_4dxw-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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