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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIGAGTGEWVLLVSG
SSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHKLE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2z9h-a1-m1-cB 97 97 1.0000 1.0000 1.0000 6.13e-67 2z9h-a1-m1-cC_2z9h-a1-m1-cB
2 2hd3-a1-m1-cD 93 95 0.9381 0.9785 0.9579 6.38e-60 2hd3-a1-m1-cC_2hd3-a1-m1-cD
3 2z9h-a1-m1-cC 83 95 0.8557 1.0000 0.8737 2.82e-52 2z9h-a1-m1-cC_2z9h-a1-m1-cB
4 2hd3-a1-m1-cC 81 95 0.8144 0.9753 0.8316 2.19e-46 2hd3-a1-m1-cC_2hd3-a1-m1-cD
5 4jw0-a1-m1-cD 95 95 0.3918 0.4000 0.4000 4.25e-19 4jw0-a1-m1-cC_4jw0-a1-m1-cD
6 4jw0-a1-m1-cC 95 95 0.3918 0.4000 0.4000 4.25e-19 4jw0-a1-m1-cC_4jw0-a1-m1-cD
7 2qw7-a2-m1-cJ 96 95 0.3814 0.3854 0.3895 1.89e-17 2qw7-a2-m1-cI_2qw7-a2-m1-cJ
8 2qw7-a2-m1-cI 96 95 0.3814 0.3854 0.3895 1.89e-17 2qw7-a2-m1-cI_2qw7-a2-m1-cJ
9 4i7a-a1-m1-cE 87 85 0.3814 0.4253 0.4353 2.96e-15 4i7a-a1-m1-cD_4i7a-a1-m1-cE
10 4i7a-a1-m1-cD 87 85 0.3814 0.4253 0.4353 2.96e-15 4i7a-a1-m1-cD_4i7a-a1-m1-cE
11 2rcf-a1-m1-cE 80 84 0.3402 0.4125 0.3929 2.90e-11 2rcf-a1-m1-cD_2rcf-a1-m1-cE
12 2rcf-a1-m1-cD 80 84 0.3402 0.4125 0.3929 2.90e-11 2rcf-a1-m1-cD_2rcf-a1-m1-cE
13 5l37-a1-m1-cE 78 83 0.2990 0.3718 0.3494 5.37e-07 5l37-a1-m1-cD_5l37-a1-m1-cE
14 5l37-a1-m1-cD 77 80 0.2887 0.3636 0.3500 4.37e-06 5l37-a1-m1-cD_5l37-a1-m1-cE
15 6jy5-a1-m1-cD 82 83 0.2784 0.3293 0.3253 7.81e-05 6jy5-a1-m1-cB_6jy5-a1-m1-cD
16 6jy5-a1-m1-cB 82 83 0.2784 0.3293 0.3253 7.81e-05 6jy5-a1-m1-cB_6jy5-a1-m1-cD
17 4qdc-a1-m3-cA 369 41 0.1546 0.0407 0.3659 0.98 4qdc-a1-m2-cA_4qdc-a1-m3-cA
18 4qdc-a1-m2-cA 369 41 0.1546 0.0407 0.3659 0.98 4qdc-a1-m2-cA_4qdc-a1-m3-cA
19 6ymh-a1-m1-cAAA 153 72 0.1959 0.1242 0.2639 4.0 6ymh-a1-m1-cAAA_6ymh-a1-m1-cBBB
20 6ymh-a1-m1-cBBB 202 72 0.1959 0.0941 0.2639 4.7 6ymh-a1-m1-cAAA_6ymh-a1-m1-cBBB
21 1uin-a2-m2-cA 350 46 0.1443 0.0400 0.3043 9.4 1uin-a2-m1-cA_1uin-a2-m2-cA, 1uin-a2-m4-cB_1uin-a2-m2-cA
22 1uin-a2-m1-cA 350 46 0.1443 0.0400 0.3043 9.4 1uin-a2-m1-cA_1uin-a2-m2-cA, 1uin-a2-m4-cB_1uin-a2-m1-cA
23 1v7c-a2-m1-cD 351 46 0.1443 0.0399 0.3043 9.5 1v7c-a2-m1-cC_1v7c-a2-m1-cD
24 1v7c-a2-m1-cC 351 46 0.1443 0.0399 0.3043 9.5 1v7c-a2-m1-cC_1v7c-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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