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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=77)
MKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGNTTFIIGTEDERVEDALAIIKENCAT
VFVMPVESFHHFLEHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4rwx-a1-m1-cC 77 77 1.0000 1.0000 1.0000 5.56e-53 4rwx-a1-m1-cC_4rwx-a1-m1-cB
2 4rwx-a1-m1-cB 84 84 0.9870 0.9048 0.9048 3.14e-49 4rwx-a1-m1-cC_4rwx-a1-m1-cB
3 4rww-a1-m1-cC 103 103 0.9740 0.7282 0.7282 1.33e-43 4rww-a1-m1-cC_4rww-a1-m1-cB
4 4rww-a1-m1-cB 106 106 0.9740 0.7075 0.7075 3.81e-43 4rww-a1-m1-cC_4rww-a1-m1-cB
5 4wk1-a1-m3-cA 92 84 0.6104 0.5109 0.5595 1.63e-25 4wk1-a1-m2-cA_4wk1-a1-m3-cA
6 4wk1-a1-m2-cA 92 84 0.6104 0.5109 0.5595 1.63e-25 4wk1-a1-m2-cA_4wk1-a1-m3-cA
7 4d3h-a1-m1-cC 101 92 0.6104 0.4653 0.5109 2.03e-24 4d3h-a1-m1-cC_4d3h-a1-m1-cA, 4d3h-a1-m1-cC_4d3h-a1-m1-cB
8 4d3h-a1-m1-cA 103 94 0.6104 0.4563 0.5000 4.51e-24 4d3h-a1-m1-cC_4d3h-a1-m1-cA
9 4d3h-a1-m1-cB 104 96 0.6104 0.4519 0.4896 9.64e-24 4d3h-a1-m1-cC_4d3h-a1-m1-cB
10 4rle-a1-m3-cA 116 109 0.6623 0.4397 0.4679 1.91e-21 4rle-a1-m2-cA_4rle-a1-m3-cA
11 4rle-a1-m2-cA 116 109 0.6623 0.4397 0.4679 1.91e-21 4rle-a1-m2-cA_4rle-a1-m3-cA
12 3m05-a3-m3-cC 96 95 0.5455 0.4375 0.4421 2.19e-15 3m05-a3-m3-cC_3m05-a3-m1-cB
13 3m05-a1-m1-cC 96 95 0.5455 0.4375 0.4421 2.19e-15 3m05-a1-m1-cC_3m05-a1-m1-cB
14 3m05-a3-m1-cB 97 95 0.5455 0.4330 0.4421 2.37e-15 3m05-a3-m3-cC_3m05-a3-m1-cB
15 3m05-a1-m1-cB 97 95 0.5455 0.4330 0.4421 2.37e-15 3m05-a1-m1-cC_3m05-a1-m1-cB
16 4h40-a1-m1-cA 295 33 0.1169 0.0305 0.2727 3.0 4h40-a1-m1-cA_4h40-a1-m1-cB
17 4h40-a1-m1-cB 299 33 0.1169 0.0301 0.2727 3.2 4h40-a1-m1-cA_4h40-a1-m1-cB
18 2pnf-a1-m2-cB 248 22 0.1429 0.0444 0.5000 6.5 2pnf-a1-m1-cB_2pnf-a1-m2-cB, 2pnf-a1-m2-cA_2pnf-a1-m2-cB
19 2pnf-a1-m2-cA 248 22 0.1429 0.0444 0.5000 6.5 2pnf-a1-m2-cA_2pnf-a1-m2-cB
20 2pnf-a1-m1-cB 248 22 0.1429 0.0444 0.5000 6.5 2pnf-a1-m1-cB_2pnf-a1-m2-cB
21 5da8-a1-m1-cC 478 48 0.2078 0.0335 0.3333 6.6 5da8-a1-m1-cC_5da8-a1-m1-cI, 5da8-a1-m1-cC_5da8-a1-m1-cJ
22 7cm9-a2-m1-cD 692 62 0.2078 0.0231 0.2581 7.4 7cm9-a2-m1-cD_7cm9-a2-m1-cC
23 7cm9-a2-m1-cC 693 62 0.2078 0.0231 0.2581 7.4 7cm9-a2-m1-cD_7cm9-a2-m1-cC
24 3imf-a1-m1-cC 232 30 0.1429 0.0474 0.3667 7.6 3imf-a1-m1-cC_3imf-a1-m1-cD
25 3imf-a1-m1-cD 238 30 0.1429 0.0462 0.3667 7.6 3imf-a1-m1-cA_3imf-a1-m1-cD, 3imf-a1-m1-cC_3imf-a1-m1-cD, 3imf-a1-m1-cD_3imf-a1-m1-cB
26 3imf-a1-m1-cA 238 30 0.1429 0.0462 0.3667 7.6 3imf-a1-m1-cA_3imf-a1-m1-cD
27 3imf-a1-m1-cB 239 30 0.1429 0.0460 0.3667 7.6 3imf-a1-m1-cD_3imf-a1-m1-cB
28 3f5f-a1-m3-cA 656 60 0.2208 0.0259 0.2833 8.0 3f5f-a1-m2-cA_3f5f-a1-m3-cA
29 3f5f-a1-m2-cA 656 60 0.2208 0.0259 0.2833 8.0 3f5f-a1-m2-cA_3f5f-a1-m3-cA
30 2p35-a1-m1-cB 234 32 0.1558 0.0513 0.3750 9.3 2p35-a1-m1-cB_2p35-a1-m1-cA
31 2p35-a1-m1-cA 239 32 0.1558 0.0502 0.3750 9.4 2p35-a1-m1-cB_2p35-a1-m1-cA
32 7vb4-a1-m1-cB 461 41 0.1558 0.0260 0.2927 9.9 7vb4-a1-m1-cA_7vb4-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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