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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
MKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGNTTFIIGTEDERVEDALAIIKENCKA
REQVGGATVFVMPVESFHHFLEHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4rwx-a1-m1-cB 84 84 1.0000 1.0000 1.0000 1.47e-58 4rwx-a1-m1-cC_4rwx-a1-m1-cB
2 4rww-a1-m1-cC 103 103 0.9881 0.8058 0.8058 3.34e-51 4rww-a1-m1-cC_4rww-a1-m1-cB
3 4rww-a1-m1-cB 106 106 0.9881 0.7830 0.7830 9.53e-51 4rww-a1-m1-cC_4rww-a1-m1-cB
4 4rwx-a1-m1-cC 77 84 0.9048 0.9870 0.9048 3.43e-49 4rwx-a1-m1-cC_4rwx-a1-m1-cB
5 4d3h-a1-m1-cC 101 92 0.6310 0.5248 0.5761 4.12e-30 4d3h-a1-m1-cC_4d3h-a1-m1-cA, 4d3h-a1-m1-cC_4d3h-a1-m1-cB
6 4d3h-a1-m1-cA 103 94 0.6310 0.5146 0.5638 9.59e-30 4d3h-a1-m1-cC_4d3h-a1-m1-cA
7 4d3h-a1-m1-cB 104 96 0.6310 0.5096 0.5521 1.99e-29 4d3h-a1-m1-cC_4d3h-a1-m1-cB
8 4wk1-a1-m3-cA 92 86 0.5952 0.5435 0.5814 1.58e-28 4wk1-a1-m2-cA_4wk1-a1-m3-cA
9 4wk1-a1-m2-cA 92 86 0.5952 0.5435 0.5814 1.58e-28 4wk1-a1-m2-cA_4wk1-a1-m3-cA
10 4rle-a1-m3-cA 116 109 0.6667 0.4828 0.5138 3.11e-27 4rle-a1-m2-cA_4rle-a1-m3-cA
11 4rle-a1-m2-cA 116 109 0.6667 0.4828 0.5138 3.11e-27 4rle-a1-m2-cA_4rle-a1-m3-cA
12 3m05-a3-m1-cB 97 95 0.5714 0.4948 0.5053 4.02e-21 3m05-a3-m3-cC_3m05-a3-m1-cB
13 3m05-a1-m1-cB 97 95 0.5714 0.4948 0.5053 4.02e-21 3m05-a1-m1-cC_3m05-a1-m1-cB
14 3m05-a3-m3-cC 96 95 0.5714 0.5000 0.5053 4.27e-21 3m05-a3-m3-cC_3m05-a3-m1-cB
15 3m05-a1-m1-cC 96 95 0.5714 0.5000 0.5053 4.27e-21 3m05-a1-m1-cC_3m05-a1-m1-cB
16 1v3r-a1-m1-cC 90 85 0.2738 0.2556 0.2706 0.087 1v3r-a1-m1-cC_1v3r-a1-m1-cA
17 1v3r-a1-m1-cA 92 86 0.2738 0.2500 0.2674 0.12 1v3r-a1-m1-cC_1v3r-a1-m1-cA
18 1ufl-a2-m2-cC 99 93 0.3095 0.2626 0.2796 0.15 1ufl-a2-m2-cC_1ufl-a2-m1-cA
19 1ufl-a2-m1-cA 108 103 0.3214 0.2500 0.2621 0.72 1ufl-a2-m2-cC_1ufl-a2-m1-cA
20 7p4v-a1-m3-cA 113 34 0.1786 0.1327 0.4412 1.9 7p4v-a1-m2-cA_7p4v-a1-m3-cA
21 7p4v-a1-m2-cA 113 34 0.1786 0.1327 0.4412 1.9 7p4v-a1-m2-cA_7p4v-a1-m3-cA
22 3pxu-a2-m9-cA 159 49 0.1548 0.0818 0.2653 4.2 3pxu-a2-m27-cA_3pxu-a2-m9-cA
23 3pxu-a2-m27-cA 159 49 0.1548 0.0818 0.2653 4.2 3pxu-a2-m27-cA_3pxu-a2-m9-cA
24 3k9w-a1-m6-cA 163 49 0.1548 0.0798 0.2653 4.7 3k9w-a1-m2-cA_3k9w-a1-m6-cA, 3k9w-a1-m3-cA_3k9w-a1-m6-cA, 3k9w-a1-m5-cA_3k9w-a1-m6-cA
25 3k9w-a1-m5-cA 163 49 0.1548 0.0798 0.2653 4.7 3k9w-a1-m5-cA_3k9w-a1-m6-cA
26 3k9w-a1-m3-cA 163 49 0.1548 0.0798 0.2653 4.7 3k9w-a1-m3-cA_3k9w-a1-m6-cA
27 3k9w-a1-m2-cA 163 49 0.1548 0.0798 0.2653 4.7 3k9w-a1-m2-cA_3k9w-a1-m6-cA

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Reference:
Jacob Schwartz et al.

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