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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MKLIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGGTTVKMELHEKVRLEIGVSEPFV
KPTVEAILKAARTGEVGDGKIFVLPVEKVYRIRTGEEDE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1ufl-a2-m2-cC 99 99 1.0000 1.0000 1.0000 6.74e-66 1ufl-a2-m2-cC_1ufl-a2-m1-cA
2 1ufl-a2-m1-cA 108 108 0.9899 0.9074 0.9074 7.27e-62 1ufl-a2-m2-cC_1ufl-a2-m1-cA
3 1v3r-a1-m1-cA 92 99 0.9293 1.0000 0.9293 9.30e-58 1v3r-a1-m1-cC_1v3r-a1-m1-cA
4 1v3r-a1-m1-cC 90 98 0.9091 1.0000 0.9184 2.11e-56 1v3r-a1-m1-cC_1v3r-a1-m1-cA
5 2xul-a1-m1-cA 106 101 0.5152 0.4811 0.5050 1.42e-25 2xul-a1-m1-cA_2xul-a1-m1-cC
6 3lf0-a1-m1-cC 101 96 0.4545 0.4455 0.4688 1.53e-24 3lf0-a1-m1-cC_3lf0-a1-m1-cB
7 3ta2-a2-m5-cB 109 108 0.4949 0.4495 0.4537 2.45e-24 3ta2-a2-m4-cB_3ta2-a2-m5-cB
8 3ta2-a2-m4-cB 109 108 0.4949 0.4495 0.4537 2.45e-24 3ta2-a2-m4-cB_3ta2-a2-m5-cB
9 2xul-a1-m1-cC 107 102 0.5051 0.4673 0.4902 5.20e-24 2xul-a1-m1-cA_2xul-a1-m1-cC
10 1ul3-a2-m3-cD 95 98 0.4949 0.5158 0.5000 6.75e-24 1ul3-a2-m2-cD_1ul3-a2-m3-cD
11 1ul3-a2-m2-cD 95 98 0.4949 0.5158 0.5000 6.75e-24 1ul3-a2-m2-cD_1ul3-a2-m3-cD
12 3t9z-a2-m1-cF 94 98 0.4747 0.5000 0.4796 7.17e-24 3t9z-a2-m1-cD_3t9z-a2-m1-cF
13 3t9z-a2-m1-cD 93 98 0.4747 0.5054 0.4796 7.61e-24 3t9z-a2-m1-cD_3t9z-a2-m1-cF
14 3bzq-a1-m3-cA 99 96 0.4444 0.4444 0.4583 1.15e-23 3bzq-a1-m2-cA_3bzq-a1-m3-cA
15 3bzq-a1-m2-cA 99 96 0.4444 0.4444 0.4583 1.15e-23 3bzq-a1-m2-cA_3bzq-a1-m3-cA
16 3lf0-a1-m1-cB 112 105 0.4545 0.4018 0.4286 1.49e-23 3lf0-a1-m1-cC_3lf0-a1-m1-cB
17 3n5b-a1-m3-cA 112 108 0.5051 0.4464 0.4630 1.50e-23 3n5b-a1-m2-cA_3n5b-a1-m3-cA
18 3n5b-a1-m2-cA 112 108 0.5051 0.4464 0.4630 1.50e-23 3n5b-a1-m2-cA_3n5b-a1-m3-cA
19 4cnz-a1-m1-cB 100 98 0.4848 0.4800 0.4898 2.63e-23 4cnz-a1-m1-cA_4cnz-a1-m1-cB
20 4cnz-a1-m1-cA 100 98 0.4848 0.4800 0.4898 2.63e-23 4cnz-a1-m1-cA_4cnz-a1-m1-cB
21 4co2-a2-m3-cA 112 108 0.4848 0.4286 0.4444 4.94e-23 4co2-a2-m2-cA_4co2-a2-m3-cA
22 4co2-a2-m2-cA 112 108 0.4848 0.4286 0.4444 4.94e-23 4co2-a2-m2-cA_4co2-a2-m3-cA
23 1ul3-a3-m5-cA 95 98 0.4848 0.5053 0.4898 4.98e-23 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
24 4c3l-a1-m3-cA 89 96 0.4848 0.5393 0.5000 1.71e-22 4c3l-a1-m2-cA_4c3l-a1-m3-cA
25 4c3l-a1-m2-cA 89 96 0.4848 0.5393 0.5000 1.71e-22 4c3l-a1-m2-cA_4c3l-a1-m3-cA
26 1ul3-a3-m4-cB 94 98 0.4747 0.5000 0.4796 2.75e-22 1ul3-a3-m4-cB_1ul3-a3-m5-cA
27 1ul3-a3-m1-cC 94 98 0.4747 0.5000 0.4796 2.75e-22 1ul3-a3-m1-cC_1ul3-a3-m5-cA
28 2pii-a1-m3-cA 112 109 0.4545 0.4018 0.4128 1.02e-21 2pii-a1-m2-cA_2pii-a1-m3-cA
29 2pii-a1-m2-cA 112 109 0.4545 0.4018 0.4128 1.02e-21 2pii-a1-m2-cA_2pii-a1-m3-cA
30 5l9n-a1-m3-cA 92 99 0.4343 0.4674 0.4343 1.82e-21 5l9n-a1-m2-cA_5l9n-a1-m3-cA
31 5l9n-a1-m2-cA 92 99 0.4343 0.4674 0.4343 1.82e-21 5l9n-a1-m2-cA_5l9n-a1-m3-cA
32 2o66-a2-m2-cA 107 94 0.4444 0.4112 0.4681 2.44e-21 2o66-a2-m2-cC_2o66-a2-m2-cA
33 2o66-a2-m1-cA 107 94 0.4444 0.4112 0.4681 2.44e-21 2o66-a2-m2-cC_2o66-a2-m1-cA
34 2rd5-a1-m3-cD 126 105 0.4646 0.3651 0.4381 2.77e-21 2rd5-a1-m2-cD_2rd5-a1-m3-cD
35 2rd5-a1-m2-cD 126 105 0.4646 0.3651 0.4381 2.77e-21 2rd5-a1-m2-cD_2rd5-a1-m3-cD
36 2gw8-a1-m3-cA 99 99 0.4242 0.4242 0.4242 4.19e-21 2gw8-a1-m2-cA_2gw8-a1-m3-cA
37 2gw8-a1-m2-cA 99 99 0.4242 0.4242 0.4242 4.19e-21 2gw8-a1-m2-cA_2gw8-a1-m3-cA
38 2eg2-a2-m9-cA 95 99 0.4646 0.4842 0.4646 1.22e-20 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
39 2eg2-a2-m6-cA 95 99 0.4646 0.4842 0.4646 1.22e-20 2eg2-a2-m6-cA_2eg2-a2-m9-cA
40 2eg2-a2-m5-cA 95 99 0.4646 0.4842 0.4646 1.22e-20 2eg2-a2-m5-cA_2eg2-a2-m9-cA
41 7p4v-a1-m3-cA 113 106 0.4444 0.3894 0.4151 1.65e-20 7p4v-a1-m2-cA_7p4v-a1-m3-cA
42 7p4v-a1-m2-cA 113 106 0.4444 0.3894 0.4151 1.65e-20 7p4v-a1-m2-cA_7p4v-a1-m3-cA
43 2o66-a2-m2-cC 106 94 0.4343 0.4057 0.4574 1.84e-20 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
44 2gnk-a2-m3-cA 95 99 0.3939 0.4105 0.3939 1.38e-19 2gnk-a2-m2-cA_2gnk-a2-m3-cA
45 2gnk-a2-m2-cA 95 99 0.3939 0.4105 0.3939 1.38e-19 2gnk-a2-m2-cA_2gnk-a2-m3-cA
46 2ns1-a1-m3-cB 113 109 0.4040 0.3540 0.3670 1.71e-19 2ns1-a1-m2-cB_2ns1-a1-m3-cB
47 2ns1-a1-m2-cB 113 109 0.4040 0.3540 0.3670 1.71e-19 2ns1-a1-m2-cB_2ns1-a1-m3-cB
48 2nuu-a4-m2-cK 112 109 0.4141 0.3661 0.3761 1.76e-19 2nuu-a4-m1-cH_2nuu-a4-m2-cK
49 2nuu-a4-m1-cH 112 109 0.4141 0.3661 0.3761 1.76e-19 2nuu-a4-m1-cH_2nuu-a4-m2-cK
50 1hwu-a3-m1-cA 99 96 0.4747 0.4747 0.4896 1.84e-19 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
51 7p52-a1-m3-cA 111 106 0.4848 0.4324 0.4528 5.16e-19 7p52-a1-m2-cA_7p52-a1-m3-cA
52 7p52-a1-m2-cA 111 106 0.4848 0.4324 0.4528 5.16e-19 7p52-a1-m2-cA_7p52-a1-m3-cA
53 1hwu-a3-m2-cD 99 96 0.4646 0.4646 0.4792 3.34e-18 1hwu-a3-m1-cA_1hwu-a3-m2-cD
54 1hwu-a3-m2-cF 91 96 0.4646 0.5055 0.4792 8.43e-18 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
55 3ncp-a6-m5-cD 99 96 0.4646 0.4646 0.4792 1.04e-17 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
56 3ncp-a6-m4-cD 99 96 0.4646 0.4646 0.4792 1.04e-17 3ncp-a6-m4-cD_3ncp-a6-m5-cD
57 3ncp-a6-m4-cC 100 96 0.4646 0.4600 0.4792 1.25e-17 3ncp-a6-m5-cD_3ncp-a6-m4-cC
58 4ozn-a1-m1-cC 113 99 0.4343 0.3805 0.4343 1.51e-17 4ozn-a1-m1-cC_4ozn-a1-m1-cA
59 7p50-a1-m1-cC 115 106 0.4141 0.3565 0.3868 2.98e-17 7p50-a1-m1-cB_7p50-a1-m1-cC
60 7p50-a1-m1-cB 115 106 0.4141 0.3565 0.3868 2.98e-17 7p50-a1-m1-cB_7p50-a1-m1-cC
61 1hwu-a3-m2-cE 84 95 0.4545 0.5357 0.4737 3.34e-17 1hwu-a3-m2-cE_1hwu-a3-m2-cF
62 4ozn-a1-m1-cA 116 103 0.4343 0.3707 0.4175 5.61e-17 4ozn-a1-m1-cC_4ozn-a1-m1-cA
63 3l7p-a1-m1-cB 88 94 0.4141 0.4659 0.4362 1.28e-16 3l7p-a1-m1-cB_3l7p-a1-m1-cF
64 3l7p-a1-m1-cF 88 93 0.4040 0.4545 0.4301 8.18e-16 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
65 3l7p-a1-m1-cC 91 94 0.4141 0.4505 0.4362 3.44e-15 3l7p-a1-m1-cF_3l7p-a1-m1-cC
66 4usj-a1-m3-cD 142 104 0.4343 0.3028 0.4135 3.26e-13 4usj-a1-m2-cD_4usj-a1-m3-cD
67 4usj-a1-m2-cD 142 104 0.4343 0.3028 0.4135 3.26e-13 4usj-a1-m2-cD_4usj-a1-m3-cD
68 7o4x-a1-m3-cA 103 99 0.3939 0.3786 0.3939 4.21e-12 7o4x-a1-m2-cA_7o4x-a1-m3-cA
69 7o4x-a1-m2-cA 103 99 0.3939 0.3786 0.3939 4.21e-12 7o4x-a1-m2-cA_7o4x-a1-m3-cA
70 4r25-a1-m3-cA 114 101 0.3333 0.2895 0.3267 4.29e-10 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 101 0.3333 0.2895 0.3267 4.29e-10 4r25-a1-m2-cA_4r25-a1-m3-cA
72 4rww-a1-m1-cB 106 103 0.2828 0.2642 0.2718 0.006 4rww-a1-m1-cC_4rww-a1-m1-cB
73 4wk1-a1-m3-cA 92 95 0.2525 0.2717 0.2632 0.024 4wk1-a1-m2-cA_4wk1-a1-m3-cA
74 4wk1-a1-m2-cA 92 95 0.2525 0.2717 0.2632 0.024 4wk1-a1-m2-cA_4wk1-a1-m3-cA
75 4rle-a1-m3-cA 116 109 0.2929 0.2500 0.2661 0.027 4rle-a1-m2-cA_4rle-a1-m3-cA
76 4rle-a1-m2-cA 116 109 0.2929 0.2500 0.2661 0.027 4rle-a1-m2-cA_4rle-a1-m3-cA
77 3m05-a3-m3-cC 96 105 0.3131 0.3229 0.2952 0.035 3m05-a3-m3-cC_3m05-a3-m1-cB
78 3m05-a1-m1-cC 96 105 0.3131 0.3229 0.2952 0.035 3m05-a1-m1-cC_3m05-a1-m1-cB
79 3m05-a3-m1-cB 97 105 0.3131 0.3196 0.2952 0.038 3m05-a3-m3-cC_3m05-a3-m1-cB
80 3m05-a1-m1-cB 97 105 0.3131 0.3196 0.2952 0.038 3m05-a1-m1-cC_3m05-a1-m1-cB
81 4d3h-a1-m1-cC 101 103 0.2525 0.2475 0.2427 0.057 4d3h-a1-m1-cC_4d3h-a1-m1-cA, 4d3h-a1-m1-cC_4d3h-a1-m1-cB
82 4d3h-a1-m1-cA 103 103 0.2727 0.2621 0.2621 0.078 4d3h-a1-m1-cC_4d3h-a1-m1-cA
83 4d3h-a1-m1-cB 104 104 0.2727 0.2596 0.2596 0.16 4d3h-a1-m1-cC_4d3h-a1-m1-cB
84 4rwx-a1-m1-cB 84 93 0.2626 0.3095 0.2796 0.18 4rwx-a1-m1-cC_4rwx-a1-m1-cB
85 3kvy-a1-m1-cA 290 60 0.2020 0.0690 0.3333 2.4 3kvy-a1-m1-cA_3kvy-a1-m1-cB
86 3kvy-a1-m1-cB 293 60 0.2020 0.0683 0.3333 2.5 3kvy-a1-m1-cA_3kvy-a1-m1-cB
87 4rww-a1-m1-cC 103 103 0.2727 0.2621 0.2621 4.0 4rww-a1-m1-cC_4rww-a1-m1-cB
88 7kua-a1-m2-cA 149 24 0.1111 0.0738 0.4583 5.4 7kua-a1-m1-cA_7kua-a1-m2-cA
89 7kua-a1-m1-cA 149 24 0.1111 0.0738 0.4583 5.4 7kua-a1-m1-cA_7kua-a1-m2-cA
90 6nob-a2-m2-cA 634 45 0.1414 0.0221 0.3111 8.4 6nob-a2-m1-cA_6nob-a2-m2-cA
91 6nob-a2-m1-cA 634 45 0.1414 0.0221 0.3111 8.4 6nob-a2-m1-cA_6nob-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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