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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
MKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELY
DVLYYVCALANIHGVNLEKTHELKEVLNKV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2q9l-a1-m1-cB 90 90 1.0000 1.0000 1.0000 1.97e-61 2q9l-a1-m1-cD_2q9l-a1-m1-cB
2 2q5z-a1-m2-cB 94 90 0.9889 0.9468 0.9889 2.21e-60 2q5z-a1-m2-cA_2q5z-a1-m2-cB
3 2q5z-a1-m2-cA 93 90 0.9889 0.9570 0.9889 3.87e-60 2q5z-a1-m2-cA_2q5z-a1-m2-cB
4 2q9l-a1-m1-cD 78 78 0.8667 1.0000 1.0000 1.42e-52 2q9l-a1-m1-cD_2q9l-a1-m1-cB
5 1vmg-a2-m4-cA 80 81 0.3000 0.3375 0.3333 3.99e-06 1vmg-a2-m1-cA_1vmg-a2-m4-cA, 1vmg-a2-m2-cA_1vmg-a2-m4-cA, 1vmg-a2-m3-cA_1vmg-a2-m4-cA
6 1vmg-a2-m3-cA 80 81 0.3000 0.3375 0.3333 3.99e-06 1vmg-a2-m3-cA_1vmg-a2-m4-cA
7 1vmg-a2-m2-cA 80 81 0.3000 0.3375 0.3333 3.99e-06 1vmg-a2-m2-cA_1vmg-a2-m4-cA
8 1vmg-a2-m1-cA 80 81 0.3000 0.3375 0.3333 3.99e-06 1vmg-a2-m1-cA_1vmg-a2-m4-cA
9 5ie9-a1-m1-cD 92 96 0.3333 0.3261 0.3125 4.23e-04 5ie9-a1-m1-cD_5ie9-a1-m1-cA, 5ie9-a1-m1-cD_5ie9-a1-m1-cB, 5ie9-a1-m1-cD_5ie9-a1-m1-cC
10 7mu5-a1-m1-cA 110 63 0.2444 0.2000 0.3492 0.002 7mu5-a1-m1-cG_7mu5-a1-m1-cA
11 7mu5-a2-m1-cH 104 59 0.2333 0.2019 0.3559 0.003 7mu5-a2-m1-cH_7mu5-a2-m1-cB, 7mu5-a2-m1-cH_7mu5-a2-m1-cF
12 7mu5-a2-m1-cB 105 59 0.2333 0.2000 0.3559 0.003 7mu5-a2-m1-cH_7mu5-a2-m1-cB
13 2oig-a1-m1-cC 90 64 0.2556 0.2556 0.3594 0.007 2oig-a1-m1-cC_2oig-a1-m1-cD
14 2gta-a1-m1-cB 90 85 0.2778 0.2778 0.2941 0.008 2gta-a1-m1-cC_2gta-a1-m1-cB
15 2oig-a1-m1-cD 104 66 0.2333 0.2019 0.3182 0.010 2oig-a1-m1-cC_2oig-a1-m1-cD
16 7mu5-a2-m1-cF 106 60 0.2444 0.2075 0.3667 0.011 7mu5-a2-m1-cH_7mu5-a2-m1-cF
17 7mu5-a1-m1-cG 104 60 0.2444 0.2115 0.3667 0.011 7mu5-a1-m1-cG_7mu5-a1-m1-cA
18 5ie9-a1-m1-cB 94 96 0.3222 0.3085 0.3021 0.012 5ie9-a1-m1-cD_5ie9-a1-m1-cB
19 5ie9-a1-m1-cA 94 96 0.3222 0.3085 0.3021 0.012 5ie9-a1-m1-cD_5ie9-a1-m1-cA
20 2gta-a1-m1-cA 92 85 0.2667 0.2609 0.2824 0.013 2gta-a1-m1-cC_2gta-a1-m1-cA
21 5ie9-a1-m1-cC 95 96 0.3222 0.3053 0.3021 0.013 5ie9-a1-m1-cD_5ie9-a1-m1-cC
22 7ody-a1-m1-cA 99 90 0.2889 0.2626 0.2889 0.20 7ody-a1-m1-cD_7ody-a1-m1-cA
23 4qgp-a2-m1-cB 105 50 0.2000 0.1714 0.3600 0.20 4qgp-a2-m1-cB_4qgp-a2-m1-cA
24 4qgp-a1-m2-cB 105 50 0.2000 0.1714 0.3600 0.20 4qgp-a1-m1-cB_4qgp-a1-m2-cB, 4qgp-a1-m2-cB_4qgp-a1-m1-cA
25 4qgp-a1-m1-cB 105 50 0.2000 0.1714 0.3600 0.20 4qgp-a1-m1-cB_4qgp-a1-m2-cB
26 4qgp-a2-m1-cA 106 50 0.2000 0.1698 0.3600 0.20 4qgp-a2-m1-cB_4qgp-a2-m1-cA
27 4qgp-a1-m1-cA 106 50 0.2000 0.1698 0.3600 0.20 4qgp-a1-m2-cB_4qgp-a1-m1-cA
28 7ody-a1-m1-cB 94 90 0.2889 0.2766 0.2889 0.23 7ody-a1-m1-cD_7ody-a1-m1-cB
29 4cg4-a2-m1-cD 376 37 0.1444 0.0346 0.3514 0.42 4cg4-a2-m1-cC_4cg4-a2-m1-cD
30 4cg4-a2-m1-cC 376 37 0.1444 0.0346 0.3514 0.42 4cg4-a2-m1-cC_4cg4-a2-m1-cD
31 7ody-a1-m1-cC 100 90 0.2889 0.2600 0.2889 0.51 7ody-a1-m1-cD_7ody-a1-m1-cC
32 2gta-a1-m1-cC 81 85 0.2667 0.2963 0.2824 0.51 2gta-a1-m1-cC_2gta-a1-m1-cA, 2gta-a1-m1-cC_2gta-a1-m1-cB
33 7ody-a1-m1-cD 92 90 0.2778 0.2717 0.2778 0.74 7ody-a1-m1-cD_7ody-a1-m1-cA, 7ody-a1-m1-cD_7ody-a1-m1-cB, 7ody-a1-m1-cD_7ody-a1-m1-cC
34 7cdw-a1-m1-cB 662 53 0.2333 0.0317 0.3962 1.6 7cdw-a1-m1-cB_7cdw-a1-m1-cA
35 7cdw-a1-m1-cA 667 53 0.2333 0.0315 0.3962 1.8 7cdw-a1-m1-cB_7cdw-a1-m1-cA
36 2ivo-a1-m2-cB 325 72 0.2444 0.0677 0.3056 8.0 2ivo-a1-m2-cA_2ivo-a1-m2-cB
37 2ivo-a1-m2-cA 325 72 0.2444 0.0677 0.3056 8.0 2ivo-a1-m1-cA_2ivo-a1-m2-cA, 2ivo-a1-m2-cA_2ivo-a1-m2-cB
38 2ivo-a1-m1-cA 325 72 0.2444 0.0677 0.3056 8.0 2ivo-a1-m1-cA_2ivo-a1-m2-cA
39 4y9d-a1-m2-cA 235 25 0.1333 0.0511 0.4800 8.0 4y9d-a1-m1-cA_4y9d-a1-m2-cA
40 4y9d-a1-m1-cA 235 25 0.1333 0.0511 0.4800 8.0 4y9d-a1-m1-cA_4y9d-a1-m2-cA
41 6u5b-a1-m1-cl 285 52 0.1444 0.0456 0.2500 9.1 6u5b-a1-m1-ck_6u5b-a1-m1-cl
42 6u5b-a1-m1-ck 285 52 0.1444 0.0456 0.2500 9.1 6u5b-a1-m1-ck_6u5b-a1-m1-cl
43 6m5n-a1-m4-cA 259 20 0.1111 0.0386 0.5000 9.2 6m5n-a1-m1-cA_6m5n-a1-m4-cA, 6m5n-a1-m2-cA_6m5n-a1-m4-cA
44 6m5n-a1-m2-cA 259 20 0.1111 0.0386 0.5000 9.2 6m5n-a1-m2-cA_6m5n-a1-m4-cA
45 6m5n-a1-m1-cA 259 20 0.1111 0.0386 0.5000 9.2 6m5n-a1-m1-cA_6m5n-a1-m4-cA
46 1uxt-a1-m4-cA 499 24 0.1222 0.0220 0.4583 9.6 1uxt-a1-m1-cA_1uxt-a1-m4-cA, 1uxt-a1-m2-cA_1uxt-a1-m4-cA, 1uxt-a1-m3-cA_1uxt-a1-m4-cA
47 1uxt-a1-m3-cA 499 24 0.1222 0.0220 0.4583 9.6 1uxt-a1-m3-cA_1uxt-a1-m4-cA
48 1uxt-a1-m2-cA 499 24 0.1222 0.0220 0.4583 9.6 1uxt-a1-m2-cA_1uxt-a1-m4-cA
49 1uxt-a1-m1-cA 499 24 0.1222 0.0220 0.4583 9.6 1uxt-a1-m1-cA_1uxt-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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