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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGFLPKVKIDVAIADDQLDEVIDIV
SKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2gnk-a2-m3-cA 95 95 1.0000 1.0000 1.0000 1.04e-61 2gnk-a2-m2-cA_2gnk-a2-m3-cA
2 2gnk-a2-m2-cA 95 95 1.0000 1.0000 1.0000 1.04e-61 2gnk-a2-m2-cA_2gnk-a2-m3-cA
3 2ns1-a1-m3-cB 113 112 1.0000 0.8407 0.8482 1.57e-57 2ns1-a1-m2-cB_2ns1-a1-m3-cB
4 2ns1-a1-m2-cB 113 112 1.0000 0.8407 0.8482 1.57e-57 2ns1-a1-m2-cB_2ns1-a1-m3-cB
5 2nuu-a4-m2-cK 112 112 1.0000 0.8482 0.8482 1.68e-57 2nuu-a4-m1-cH_2nuu-a4-m2-cK
6 2nuu-a4-m1-cH 112 112 1.0000 0.8482 0.8482 1.68e-57 2nuu-a4-m1-cH_2nuu-a4-m2-cK
7 4cnz-a1-m1-cB 100 100 0.6632 0.6300 0.6300 1.40e-40 4cnz-a1-m1-cA_4cnz-a1-m1-cB
8 4cnz-a1-m1-cA 100 100 0.6632 0.6300 0.6300 1.40e-40 4cnz-a1-m1-cA_4cnz-a1-m1-cB
9 4co2-a2-m3-cA 112 112 0.6632 0.5625 0.5625 1.11e-38 4co2-a2-m2-cA_4co2-a2-m3-cA
10 4co2-a2-m2-cA 112 112 0.6632 0.5625 0.5625 1.11e-38 4co2-a2-m2-cA_4co2-a2-m3-cA
11 5l9n-a1-m3-cA 92 92 0.6211 0.6413 0.6413 3.17e-37 5l9n-a1-m2-cA_5l9n-a1-m3-cA
12 5l9n-a1-m2-cA 92 92 0.6211 0.6413 0.6413 3.17e-37 5l9n-a1-m2-cA_5l9n-a1-m3-cA
13 2pii-a1-m3-cA 112 112 0.6526 0.5536 0.5536 2.79e-35 2pii-a1-m2-cA_2pii-a1-m3-cA
14 2pii-a1-m2-cA 112 112 0.6526 0.5536 0.5536 2.79e-35 2pii-a1-m2-cA_2pii-a1-m3-cA
15 2gw8-a1-m3-cA 99 98 0.6000 0.5758 0.5816 1.30e-34 2gw8-a1-m2-cA_2gw8-a1-m3-cA
16 2gw8-a1-m2-cA 99 98 0.6000 0.5758 0.5816 1.30e-34 2gw8-a1-m2-cA_2gw8-a1-m3-cA
17 2eg2-a2-m9-cA 95 95 0.5684 0.5684 0.5684 7.93e-33 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
18 2eg2-a2-m6-cA 95 95 0.5684 0.5684 0.5684 7.93e-33 2eg2-a2-m6-cA_2eg2-a2-m9-cA
19 2eg2-a2-m5-cA 95 95 0.5684 0.5684 0.5684 7.93e-33 2eg2-a2-m5-cA_2eg2-a2-m9-cA
20 1hwu-a3-m1-cA 99 99 0.6421 0.6162 0.6162 1.72e-32 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
21 1hwu-a3-m2-cD 99 99 0.6316 0.6061 0.6061 2.68e-31 1hwu-a3-m1-cA_1hwu-a3-m2-cD
22 3bzq-a1-m3-cA 99 97 0.4947 0.4747 0.4845 1.38e-29 3bzq-a1-m2-cA_3bzq-a1-m3-cA
23 3bzq-a1-m2-cA 99 97 0.4947 0.4747 0.4845 1.38e-29 3bzq-a1-m2-cA_3bzq-a1-m3-cA
24 3lf0-a1-m1-cC 101 100 0.4947 0.4653 0.4700 3.74e-29 3lf0-a1-m1-cC_3lf0-a1-m1-cB
25 1hwu-a3-m2-cF 91 95 0.6000 0.6264 0.6000 3.92e-29 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
26 1ul3-a3-m5-cA 95 95 0.5263 0.5263 0.5263 1.80e-28 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
27 1hwu-a3-m2-cE 84 88 0.5789 0.6548 0.6250 2.47e-28 1hwu-a3-m2-cE_1hwu-a3-m2-cF
28 4c3l-a1-m3-cA 89 89 0.5158 0.5506 0.5506 4.07e-28 4c3l-a1-m2-cA_4c3l-a1-m3-cA
29 4c3l-a1-m2-cA 89 89 0.5158 0.5506 0.5506 4.07e-28 4c3l-a1-m2-cA_4c3l-a1-m3-cA
30 3lf0-a1-m1-cB 112 111 0.4947 0.4196 0.4234 2.27e-27 3lf0-a1-m1-cC_3lf0-a1-m1-cB
31 1ul3-a2-m3-cD 95 93 0.5263 0.5263 0.5376 3.49e-27 1ul3-a2-m2-cD_1ul3-a2-m3-cD
32 1ul3-a2-m2-cD 95 93 0.5263 0.5263 0.5376 3.49e-27 1ul3-a2-m2-cD_1ul3-a2-m3-cD
33 1ul3-a3-m4-cB 94 95 0.5263 0.5319 0.5263 4.77e-27 1ul3-a3-m4-cB_1ul3-a3-m5-cA
34 1ul3-a3-m1-cC 94 95 0.5263 0.5319 0.5263 4.77e-27 1ul3-a3-m1-cC_1ul3-a3-m5-cA
35 3n5b-a1-m3-cA 112 112 0.5368 0.4554 0.4554 6.20e-27 3n5b-a1-m2-cA_3n5b-a1-m3-cA
36 3n5b-a1-m2-cA 112 112 0.5368 0.4554 0.4554 6.20e-27 3n5b-a1-m2-cA_3n5b-a1-m3-cA
37 3t9z-a2-m1-cF 94 94 0.4842 0.4894 0.4894 6.70e-27 3t9z-a2-m1-cD_3t9z-a2-m1-cF
38 2xul-a1-m1-cA 106 105 0.5368 0.4811 0.4857 1.27e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
39 2xul-a1-m1-cC 107 106 0.5368 0.4766 0.4811 1.96e-26 2xul-a1-m1-cA_2xul-a1-m1-cC
40 3t9z-a2-m1-cD 93 93 0.4737 0.4839 0.4839 3.18e-26 3t9z-a2-m1-cD_3t9z-a2-m1-cF
41 2o66-a2-m2-cA 107 94 0.4632 0.4112 0.4681 7.63e-24 2o66-a2-m2-cC_2o66-a2-m2-cA
42 2o66-a2-m1-cA 107 94 0.4632 0.4112 0.4681 7.63e-24 2o66-a2-m2-cC_2o66-a2-m1-cA
43 7p4v-a1-m3-cA 113 112 0.5053 0.4248 0.4286 2.92e-23 7p4v-a1-m2-cA_7p4v-a1-m3-cA
44 7p4v-a1-m2-cA 113 112 0.5053 0.4248 0.4286 2.92e-23 7p4v-a1-m2-cA_7p4v-a1-m3-cA
45 2o66-a2-m2-cC 106 92 0.4526 0.4057 0.4674 5.66e-23 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
46 7p52-a1-m3-cA 111 111 0.5158 0.4414 0.4414 1.95e-22 7p52-a1-m2-cA_7p52-a1-m3-cA
47 7p52-a1-m2-cA 111 111 0.5158 0.4414 0.4414 1.95e-22 7p52-a1-m2-cA_7p52-a1-m3-cA
48 3ncp-a6-m5-cD 99 99 0.4526 0.4343 0.4343 7.10e-22 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
49 3ncp-a6-m4-cD 99 99 0.4526 0.4343 0.4343 7.10e-22 3ncp-a6-m4-cD_3ncp-a6-m5-cD
50 3ncp-a6-m4-cC 100 99 0.4526 0.4300 0.4343 7.62e-22 3ncp-a6-m5-cD_3ncp-a6-m4-cC
51 3ta2-a2-m5-cB 109 108 0.4632 0.4037 0.4074 1.13e-21 3ta2-a2-m4-cB_3ta2-a2-m5-cB
52 3ta2-a2-m4-cB 109 108 0.4632 0.4037 0.4074 1.13e-21 3ta2-a2-m4-cB_3ta2-a2-m5-cB
53 2rd5-a1-m3-cD 126 109 0.4632 0.3492 0.4037 2.24e-21 2rd5-a1-m2-cD_2rd5-a1-m3-cD
54 2rd5-a1-m2-cD 126 109 0.4632 0.3492 0.4037 2.24e-21 2rd5-a1-m2-cD_2rd5-a1-m3-cD
55 1v3r-a1-m1-cA 92 92 0.4000 0.4130 0.4130 3.60e-21 1v3r-a1-m1-cC_1v3r-a1-m1-cA
56 1ufl-a2-m2-cC 99 99 0.4105 0.3939 0.3939 1.32e-19 1ufl-a2-m2-cC_1ufl-a2-m1-cA
57 1v3r-a1-m1-cC 90 91 0.3895 0.4111 0.4066 5.30e-19 1v3r-a1-m1-cC_1v3r-a1-m1-cA
58 7p50-a1-m1-cC 115 112 0.4211 0.3478 0.3571 6.01e-19 7p50-a1-m1-cB_7p50-a1-m1-cC
59 7p50-a1-m1-cB 115 112 0.4211 0.3478 0.3571 6.01e-19 7p50-a1-m1-cB_7p50-a1-m1-cC
60 3l7p-a1-m1-cB 88 88 0.4105 0.4432 0.4432 3.79e-18 3l7p-a1-m1-cB_3l7p-a1-m1-cF
61 4usj-a1-m3-cD 142 104 0.4526 0.3028 0.4135 1.17e-17 4usj-a1-m2-cD_4usj-a1-m3-cD
62 4usj-a1-m2-cD 142 104 0.4526 0.3028 0.4135 1.17e-17 4usj-a1-m2-cD_4usj-a1-m3-cD
63 1ufl-a2-m1-cA 108 108 0.4000 0.3519 0.3519 2.52e-17 1ufl-a2-m2-cC_1ufl-a2-m1-cA
64 3l7p-a1-m1-cF 88 87 0.4000 0.4318 0.4368 3.08e-17 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
65 7o4x-a1-m3-cA 103 100 0.3789 0.3495 0.3600 7.69e-17 7o4x-a1-m2-cA_7o4x-a1-m3-cA
66 7o4x-a1-m2-cA 103 100 0.3789 0.3495 0.3600 7.69e-17 7o4x-a1-m2-cA_7o4x-a1-m3-cA
67 3l7p-a1-m1-cC 91 91 0.4105 0.4286 0.4286 8.18e-16 3l7p-a1-m1-cF_3l7p-a1-m1-cC
68 4ozn-a1-m1-cC 113 105 0.4421 0.3717 0.4000 1.24e-14 4ozn-a1-m1-cC_4ozn-a1-m1-cA
69 4ozn-a1-m1-cA 116 109 0.4421 0.3621 0.3853 5.51e-14 4ozn-a1-m1-cC_4ozn-a1-m1-cA
70 4r25-a1-m3-cA 114 109 0.3474 0.2895 0.3028 1.47e-12 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 109 0.3474 0.2895 0.3028 1.47e-12 4r25-a1-m2-cA_4r25-a1-m3-cA
72 3qtp-a1-m1-cA 438 33 0.1474 0.0320 0.4242 1.4 3qtp-a1-m1-cA_3qtp-a1-m1-cB
73 3qtp-a1-m1-cB 439 33 0.1474 0.0319 0.4242 1.4 3qtp-a1-m1-cA_3qtp-a1-m1-cB
74 7vrd-a2-m1-cD 439 29 0.1158 0.0251 0.3793 6.0 7vrd-a2-m1-cC_7vrd-a2-m1-cD
75 7vrd-a2-m1-cC 439 29 0.1158 0.0251 0.3793 6.0 7vrd-a2-m1-cC_7vrd-a2-m1-cD
76 6pps-a2-m1-cD 259 42 0.1263 0.0463 0.2857 6.2 6pps-a2-m1-cC_6pps-a2-m1-cD
77 6pps-a2-m1-cC 256 42 0.1263 0.0469 0.2857 6.5 6pps-a2-m1-cC_6pps-a2-m1-cD
78 5wro-a1-m2-cA 439 33 0.1263 0.0273 0.3636 7.1 5wro-a1-m1-cA_5wro-a1-m2-cA
79 5wro-a1-m1-cA 439 33 0.1263 0.0273 0.3636 7.1 5wro-a1-m1-cA_5wro-a1-m2-cA
80 7rhw-a1-m1-cA 437 28 0.1158 0.0252 0.3929 7.2 7rhw-a1-m1-cB_7rhw-a1-m1-cA
81 7rhw-a1-m1-cB 426 28 0.1158 0.0258 0.3929 7.8 7rhw-a1-m1-cB_7rhw-a1-m1-cA
82 5c2i-a1-m1-cB 460 58 0.1895 0.0391 0.3103 8.0 5c2i-a1-m1-cB_5c2i-a1-m1-cD
83 5c2i-a1-m1-cD 461 58 0.1895 0.0390 0.3103 8.0 5c2i-a1-m1-cB_5c2i-a1-m1-cD, 5c2i-a1-m1-cC_5c2i-a1-m1-cD
84 5c2i-a1-m1-cC 461 58 0.1895 0.0390 0.3103 8.0 5c2i-a1-m1-cC_5c2i-a1-m1-cD
85 7k5k-a1-m1-cF 545 35 0.1053 0.0183 0.2857 8.0 7k5k-a1-m1-cB_7k5k-a1-m1-cF, 7k5k-a1-m1-cE_7k5k-a1-m1-cF
86 7k5k-a1-m1-cE 545 35 0.1053 0.0183 0.2857 8.0 7k5k-a1-m1-cE_7k5k-a1-m1-cF
87 7k5k-a1-m1-cB 545 35 0.1053 0.0183 0.2857 8.0 7k5k-a1-m1-cB_7k5k-a1-m1-cF
88 1hpc-a1-m1-cB 131 66 0.2211 0.1603 0.3182 8.3 1hpc-a1-m1-cA_1hpc-a1-m1-cB
89 1hpc-a1-m1-cA 131 66 0.2211 0.1603 0.3182 8.3 1hpc-a1-m1-cA_1hpc-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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