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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=66)
MKPEELVRHFGDVEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAYKLKSDFTSQR
MGKEGH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2hin-a1-m1-cA 66 66 1.0000 1.0000 1.0000 6.58e-45 2hin-a1-m1-cB_2hin-a1-m1-cA
2 2hin-a1-m1-cB 64 64 0.9697 1.0000 1.0000 4.83e-43 2hin-a1-m1-cB_2hin-a1-m1-cA
3 3bd1-a2-m1-cB 63 39 0.1970 0.2063 0.3333 0.075 3bd1-a2-m1-cB_3bd1-a2-m1-cA
4 3bd1-a2-m1-cC 64 39 0.1970 0.2031 0.3333 0.083 3bd1-a2-m1-cC_3bd1-a2-m1-cA
5 3bd1-a2-m1-cA 65 39 0.1970 0.2000 0.3333 0.087 3bd1-a2-m1-cB_3bd1-a2-m1-cA, 3bd1-a2-m1-cC_3bd1-a2-m1-cA
6 4fyp-a1-m1-cB 221 15 0.1212 0.0362 0.5333 4.2 4fyp-a1-m1-cB_4fyp-a1-m1-cA
7 4fyp-a1-m1-cA 228 15 0.1212 0.0351 0.5333 4.5 4fyp-a1-m1-cB_4fyp-a1-m1-cA
8 2qe6-a4-m2-cA 259 29 0.2121 0.0541 0.4828 6.7 2qe6-a4-m1-cA_2qe6-a4-m2-cA
9 2qe6-a4-m1-cA 259 29 0.2121 0.0541 0.4828 6.7 2qe6-a4-m1-cA_2qe6-a4-m2-cA

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Reference:
Jacob Schwartz et al.

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