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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
MKPYIRRGGRPGDETYYLNIPRDIAKALGITKEDEFMLSVETKDGEITLCYKRVKK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7xi6-a1-m1-cB 56 56 1.0000 1.0000 1.0000 3.29e-36 7xi6-a1-m1-cA_7xi6-a1-m1-cB
2 7xi6-a1-m1-cA 56 56 1.0000 1.0000 1.0000 3.29e-36 7xi6-a1-m1-cA_7xi6-a1-m1-cB
3 3o27-a1-m1-cB 57 42 0.4464 0.4386 0.5952 4.02e-12 3o27-a1-m1-cB_3o27-a1-m1-cA
4 3o27-a1-m1-cA 60 47 0.4643 0.4333 0.5532 4.60e-12 3o27-a1-m1-cB_3o27-a1-m1-cA
5 4bum-a1-m2-cX 283 36 0.2321 0.0459 0.3611 1.4 4bum-a1-m1-cX_4bum-a1-m2-cX
6 4bum-a1-m1-cX 283 36 0.2321 0.0459 0.3611 1.4 4bum-a1-m1-cX_4bum-a1-m2-cX
7 6co7-a1-m1-cD 1061 41 0.2679 0.0141 0.3659 4.3 6co7-a1-m1-cC_6co7-a1-m1-cD
8 6co7-a1-m1-cC 1061 41 0.2679 0.0141 0.3659 4.3 6co7-a1-m1-cC_6co7-a1-m1-cD
9 6unc-a6-m3-cD 272 31 0.2143 0.0441 0.3871 4.6 6unc-a6-m3-cD_6unc-a6-m1-cC
10 6unc-a6-m1-cC 276 31 0.2143 0.0435 0.3871 4.8 6unc-a6-m3-cD_6unc-a6-m1-cC
11 3p52-a2-m3-cA 222 31 0.1964 0.0495 0.3548 6.4 3p52-a2-m3-cA_3p52-a2-m3-cB
12 3p52-a2-m1-cA 222 31 0.1964 0.0495 0.3548 6.4 3p52-a2-m1-cA_3p52-a2-m3-cB
13 1aog-a1-m1-cB 483 44 0.2679 0.0311 0.3409 7.7 1aog-a1-m1-cB_1aog-a1-m1-cA
14 1aog-a1-m1-cA 485 44 0.2679 0.0309 0.3409 8.2 1aog-a1-m1-cB_1aog-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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