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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
MKQDQLIVEKMEQTYEAFSPKLANLIEALDAFKEHYEEYATLRNFYSSDEWFRLANQPWD
DIPSGVLSEDLLFDMIGDHNQLAADIADLAPIMAKHM

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4pz1-a1-m2-cA 97 97 1.0000 1.0000 1.0000 8.85e-69 4pz1-a1-m1-cA_4pz1-a1-m2-cA
2 4pz1-a1-m1-cA 97 97 1.0000 1.0000 1.0000 8.85e-69 4pz1-a1-m1-cA_4pz1-a1-m2-cA
3 4mer-a1-m1-cD 97 97 0.9485 0.9485 0.9485 1.92e-62 4mer-a1-m1-cA_4mer-a1-m1-cD, 4mer-a1-m1-cC_4mer-a1-m1-cD
4 4mer-a1-m1-cA 96 97 0.9381 0.9479 0.9381 1.19e-61 4mer-a1-m1-cA_4mer-a1-m1-cD
5 4mer-a1-m1-cC 88 96 0.8660 0.9545 0.8750 3.28e-55 4mer-a1-m1-cC_4mer-a1-m1-cD
6 5ow3-a1-m3-cC 446 25 0.1237 0.0269 0.4800 3.4 5ow3-a1-m2-cC_5ow3-a1-m3-cC
7 5ow3-a1-m2-cC 446 25 0.1237 0.0269 0.4800 3.4 5ow3-a1-m2-cC_5ow3-a1-m3-cC
8 1ixe-a1-m1-cA 371 79 0.2165 0.0566 0.2658 4.5 1ixe-a1-m1-cB_1ixe-a1-m1-cA
9 4w8f-a3-m1-cA 2608 52 0.1237 0.0046 0.2308 5.2 4w8f-a3-m1-cA_4w8f-a3-m1-cB
10 4w8f-a3-m1-cB 2609 52 0.1237 0.0046 0.2308 5.2 4w8f-a3-m1-cA_4w8f-a3-m1-cB
11 3lpx-a1-m1-cB 458 27 0.1134 0.0240 0.4074 5.4 3lpx-a1-m1-cB_3lpx-a1-m1-cA
12 3lpx-a1-m1-cA 462 27 0.1134 0.0238 0.4074 5.6 3lpx-a1-m1-cB_3lpx-a1-m1-cA
13 3r84-a19-m1-cF 74 23 0.1237 0.1622 0.5217 9.1 3r84-a19-m1-cF_3r84-a19-m1-cD, 3r84-a19-m1-cF_3r84-a19-m1-cH
14 3r84-a19-m1-cH 75 23 0.1237 0.1600 0.5217 9.3 3r84-a19-m1-cF_3r84-a19-m1-cH
15 3r84-a19-m1-cD 75 23 0.1237 0.1600 0.5217 9.3 3r84-a19-m1-cF_3r84-a19-m1-cD

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Reference:
Jacob Schwartz et al.

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