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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFEYVVDFLPKVKIEVVVDDKVVEQA
VDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1hwu-a3-m2-cD 99 99 1.0000 1.0000 1.0000 1.78e-63 1hwu-a3-m1-cA_1hwu-a3-m2-cD
2 1hwu-a3-m1-cA 99 99 0.9899 0.9899 0.9899 2.04e-62 1hwu-a3-m1-cA_1hwu-a3-m2-cD, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
3 1hwu-a3-m2-cF 91 99 0.9192 1.0000 0.9192 4.77e-54 1hwu-a3-m2-cE_1hwu-a3-m2-cF, 1hwu-a3-m2-cF_1hwu-a3-m1-cA
4 1hwu-a3-m2-cE 84 92 0.8485 1.0000 0.9130 1.04e-48 1hwu-a3-m2-cE_1hwu-a3-m2-cF
5 2pii-a1-m3-cA 112 106 0.7071 0.6250 0.6604 5.81e-41 2pii-a1-m2-cA_2pii-a1-m3-cA
6 2pii-a1-m2-cA 112 106 0.7071 0.6250 0.6604 5.81e-41 2pii-a1-m2-cA_2pii-a1-m3-cA
7 5l9n-a1-m3-cA 92 93 0.6768 0.7283 0.7204 5.71e-40 5l9n-a1-m2-cA_5l9n-a1-m3-cA
8 5l9n-a1-m2-cA 92 93 0.6768 0.7283 0.7204 5.71e-40 5l9n-a1-m2-cA_5l9n-a1-m3-cA
9 3lf0-a1-m1-cC 101 100 0.5960 0.5842 0.5900 1.42e-39 3lf0-a1-m1-cC_3lf0-a1-m1-cB
10 2gw8-a1-m3-cA 99 99 0.6465 0.6465 0.6465 5.64e-39 2gw8-a1-m2-cA_2gw8-a1-m3-cA
11 2gw8-a1-m2-cA 99 99 0.6465 0.6465 0.6465 5.64e-39 2gw8-a1-m2-cA_2gw8-a1-m3-cA
12 4co2-a2-m3-cA 112 112 0.6768 0.5982 0.5982 1.40e-38 4co2-a2-m2-cA_4co2-a2-m3-cA
13 4co2-a2-m2-cA 112 112 0.6768 0.5982 0.5982 1.40e-38 4co2-a2-m2-cA_4co2-a2-m3-cA
14 3lf0-a1-m1-cB 112 111 0.6061 0.5357 0.5405 2.25e-38 3lf0-a1-m1-cC_3lf0-a1-m1-cB
15 3bzq-a1-m3-cA 99 99 0.5859 0.5859 0.5859 2.39e-37 3bzq-a1-m2-cA_3bzq-a1-m3-cA
16 3bzq-a1-m2-cA 99 99 0.5859 0.5859 0.5859 2.39e-37 3bzq-a1-m2-cA_3bzq-a1-m3-cA
17 2eg2-a2-m9-cA 95 99 0.6465 0.6737 0.6465 3.60e-37 2eg2-a2-m5-cA_2eg2-a2-m9-cA, 2eg2-a2-m6-cA_2eg2-a2-m9-cA
18 2eg2-a2-m6-cA 95 99 0.6465 0.6737 0.6465 3.60e-37 2eg2-a2-m6-cA_2eg2-a2-m9-cA
19 2eg2-a2-m5-cA 95 99 0.6465 0.6737 0.6465 3.60e-37 2eg2-a2-m5-cA_2eg2-a2-m9-cA
20 4cnz-a1-m1-cB 100 100 0.6465 0.6400 0.6400 5.48e-37 4cnz-a1-m1-cA_4cnz-a1-m1-cB
21 4cnz-a1-m1-cA 100 100 0.6465 0.6400 0.6400 5.48e-37 4cnz-a1-m1-cA_4cnz-a1-m1-cB
22 2nuu-a4-m2-cK 112 112 0.6364 0.5625 0.5625 1.07e-35 2nuu-a4-m1-cH_2nuu-a4-m2-cK
23 2nuu-a4-m1-cH 112 112 0.6364 0.5625 0.5625 1.07e-35 2nuu-a4-m1-cH_2nuu-a4-m2-cK
24 3n5b-a1-m3-cA 112 112 0.6364 0.5625 0.5625 1.29e-35 3n5b-a1-m2-cA_3n5b-a1-m3-cA
25 3n5b-a1-m2-cA 112 112 0.6364 0.5625 0.5625 1.29e-35 3n5b-a1-m2-cA_3n5b-a1-m3-cA
26 2xul-a1-m1-cC 107 106 0.5960 0.5514 0.5566 2.67e-35 2xul-a1-m1-cA_2xul-a1-m1-cC
27 2ns1-a1-m3-cB 113 112 0.6263 0.5487 0.5536 4.94e-35 2ns1-a1-m2-cB_2ns1-a1-m3-cB
28 2ns1-a1-m2-cB 113 112 0.6263 0.5487 0.5536 4.94e-35 2ns1-a1-m2-cB_2ns1-a1-m3-cB
29 2xul-a1-m1-cA 106 105 0.5859 0.5472 0.5524 1.46e-34 2xul-a1-m1-cA_2xul-a1-m1-cC
30 2gnk-a2-m3-cA 95 99 0.6061 0.6316 0.6061 2.75e-34 2gnk-a2-m2-cA_2gnk-a2-m3-cA
31 2gnk-a2-m2-cA 95 99 0.6061 0.6316 0.6061 2.75e-34 2gnk-a2-m2-cA_2gnk-a2-m3-cA
32 1ul3-a3-m5-cA 95 99 0.5657 0.5895 0.5657 1.59e-32 1ul3-a3-m1-cC_1ul3-a3-m5-cA, 1ul3-a3-m4-cB_1ul3-a3-m5-cA
33 4c3l-a1-m3-cA 89 93 0.5556 0.6180 0.5914 3.24e-32 4c3l-a1-m2-cA_4c3l-a1-m3-cA
34 4c3l-a1-m2-cA 89 93 0.5556 0.6180 0.5914 3.24e-32 4c3l-a1-m2-cA_4c3l-a1-m3-cA
35 1ul3-a3-m4-cB 94 99 0.5556 0.5851 0.5556 1.01e-31 1ul3-a3-m4-cB_1ul3-a3-m5-cA
36 1ul3-a3-m1-cC 94 99 0.5556 0.5851 0.5556 1.01e-31 1ul3-a3-m1-cC_1ul3-a3-m5-cA
37 1ul3-a2-m3-cD 95 93 0.5455 0.5684 0.5806 3.84e-31 1ul3-a2-m2-cD_1ul3-a2-m3-cD
38 1ul3-a2-m2-cD 95 93 0.5455 0.5684 0.5806 3.84e-31 1ul3-a2-m2-cD_1ul3-a2-m3-cD
39 7p4v-a1-m3-cA 113 112 0.5556 0.4867 0.4911 6.58e-31 7p4v-a1-m2-cA_7p4v-a1-m3-cA
40 7p4v-a1-m2-cA 113 112 0.5556 0.4867 0.4911 6.58e-31 7p4v-a1-m2-cA_7p4v-a1-m3-cA
41 7p50-a1-m1-cC 115 112 0.5354 0.4609 0.4732 8.39e-27 7p50-a1-m1-cB_7p50-a1-m1-cC
42 7p50-a1-m1-cB 115 112 0.5354 0.4609 0.4732 8.39e-27 7p50-a1-m1-cB_7p50-a1-m1-cC
43 7p52-a1-m3-cA 111 111 0.5354 0.4775 0.4775 4.50e-26 7p52-a1-m2-cA_7p52-a1-m3-cA
44 7p52-a1-m2-cA 111 111 0.5354 0.4775 0.4775 4.50e-26 7p52-a1-m2-cA_7p52-a1-m3-cA
45 3ncp-a6-m5-cD 99 99 0.5051 0.5051 0.5051 1.04e-25 3ncp-a6-m4-cD_3ncp-a6-m5-cD, 3ncp-a6-m5-cD_3ncp-a6-m4-cC
46 3ncp-a6-m4-cD 99 99 0.5051 0.5051 0.5051 1.04e-25 3ncp-a6-m4-cD_3ncp-a6-m5-cD
47 3ncp-a6-m4-cC 100 99 0.5051 0.5000 0.5051 1.27e-25 3ncp-a6-m5-cD_3ncp-a6-m4-cC
48 2o66-a2-m2-cC 106 96 0.4646 0.4340 0.4792 7.65e-25 2o66-a2-m2-cC_2o66-a2-m1-cA, 2o66-a2-m2-cC_2o66-a2-m2-cA
49 3t9z-a2-m1-cF 94 93 0.4949 0.5213 0.5269 2.51e-24 3t9z-a2-m1-cD_3t9z-a2-m1-cF
50 3t9z-a2-m1-cD 93 93 0.4949 0.5269 0.5269 3.04e-24 3t9z-a2-m1-cD_3t9z-a2-m1-cF
51 3ta2-a2-m5-cB 109 106 0.5253 0.4771 0.4906 3.79e-24 3ta2-a2-m4-cB_3ta2-a2-m5-cB
52 3ta2-a2-m4-cB 109 106 0.5253 0.4771 0.4906 3.79e-24 3ta2-a2-m4-cB_3ta2-a2-m5-cB
53 2o66-a2-m2-cA 107 96 0.4646 0.4299 0.4792 1.42e-23 2o66-a2-m2-cC_2o66-a2-m2-cA
54 2o66-a2-m1-cA 107 96 0.4646 0.4299 0.4792 1.42e-23 2o66-a2-m2-cC_2o66-a2-m1-cA
55 1v3r-a1-m1-cA 92 93 0.4747 0.5109 0.5054 6.52e-23 1v3r-a1-m1-cC_1v3r-a1-m1-cA
56 2rd5-a1-m3-cD 126 110 0.4848 0.3810 0.4364 1.25e-22 2rd5-a1-m2-cD_2rd5-a1-m3-cD
57 2rd5-a1-m2-cD 126 110 0.4848 0.3810 0.4364 1.25e-22 2rd5-a1-m2-cD_2rd5-a1-m3-cD
58 1v3r-a1-m1-cC 90 93 0.4646 0.5111 0.4946 2.39e-22 1v3r-a1-m1-cC_1v3r-a1-m1-cA
59 1ufl-a2-m2-cC 99 96 0.4646 0.4646 0.4792 8.42e-22 1ufl-a2-m2-cC_1ufl-a2-m1-cA
60 4ozn-a1-m1-cC 113 105 0.5657 0.4956 0.5333 1.10e-21 4ozn-a1-m1-cC_4ozn-a1-m1-cA
61 4ozn-a1-m1-cA 116 109 0.5657 0.4828 0.5138 4.68e-21 4ozn-a1-m1-cC_4ozn-a1-m1-cA
62 1ufl-a2-m1-cA 108 106 0.4848 0.4444 0.4528 2.17e-20 1ufl-a2-m2-cC_1ufl-a2-m1-cA
63 3l7p-a1-m1-cB 88 91 0.3838 0.4318 0.4176 2.57e-18 3l7p-a1-m1-cB_3l7p-a1-m1-cF
64 3l7p-a1-m1-cC 91 91 0.3838 0.4176 0.4176 7.90e-18 3l7p-a1-m1-cF_3l7p-a1-m1-cC
65 7o4x-a1-m3-cA 103 100 0.3737 0.3592 0.3700 1.57e-17 7o4x-a1-m2-cA_7o4x-a1-m3-cA
66 7o4x-a1-m2-cA 103 100 0.3737 0.3592 0.3700 1.57e-17 7o4x-a1-m2-cA_7o4x-a1-m3-cA
67 3l7p-a1-m1-cF 88 90 0.3737 0.4205 0.4111 1.85e-17 3l7p-a1-m1-cB_3l7p-a1-m1-cF, 3l7p-a1-m1-cF_3l7p-a1-m1-cC
68 4usj-a1-m3-cD 142 110 0.4444 0.3099 0.4000 1.52e-15 4usj-a1-m2-cD_4usj-a1-m3-cD
69 4usj-a1-m2-cD 142 110 0.4444 0.3099 0.4000 1.52e-15 4usj-a1-m2-cD_4usj-a1-m3-cD
70 4r25-a1-m3-cA 114 112 0.3737 0.3246 0.3304 3.25e-15 4r25-a1-m2-cA_4r25-a1-m3-cA
71 4r25-a1-m2-cA 114 112 0.3737 0.3246 0.3304 3.25e-15 4r25-a1-m2-cA_4r25-a1-m3-cA
72 6cxs-a2-m2-cB 599 55 0.1414 0.0234 0.2545 1.2 6cxs-a2-m1-cB_6cxs-a2-m2-cB, 6cxs-a2-m2-cA_6cxs-a2-m2-cB
73 6cxs-a2-m1-cB 599 55 0.1414 0.0234 0.2545 1.2 6cxs-a2-m1-cB_6cxs-a2-m2-cB
74 6cxs-a2-m2-cA 598 55 0.1414 0.0234 0.2545 1.2 6cxs-a2-m2-cA_6cxs-a2-m2-cB
75 4jkm-a1-m1-cB 602 55 0.1414 0.0233 0.2545 1.3 4jkm-a1-m1-cA_4jkm-a1-m1-cB
76 4jkm-a1-m1-cA 602 55 0.1414 0.0233 0.2545 1.3 4jkm-a1-m1-cA_4jkm-a1-m1-cB
77 8dh0-a1-m1-cJ 805 52 0.1616 0.0199 0.3077 6.5 8dh0-a1-m1-cJ_8dh0-a1-m1-cB
78 8dh0-a1-m1-cB 840 52 0.1616 0.0190 0.3077 7.2 8dh0-a1-m1-cF_8dh0-a1-m1-cB, 8dh0-a1-m1-cJ_8dh0-a1-m1-cB
79 7fh3-a1-m1-cB 391 75 0.1818 0.0460 0.2400 8.4 7fh3-a1-m1-cA_7fh3-a1-m1-cB
80 7fh3-a1-m1-cA 391 75 0.1818 0.0460 0.2400 8.4 7fh3-a1-m1-cA_7fh3-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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