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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MLQPPFNIKVTNITLTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLT
NLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3b83-a1-m8-cG 99 99 1.0000 1.0000 1.0000 4.66e-68 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m2-cE_3b83-a1-m8-cG
2 3b83-a1-m4-cE 99 99 1.0000 1.0000 1.0000 4.66e-68 3b83-a1-m1-cC_3b83-a1-m4-cE, 3b83-a1-m4-cC_3b83-a1-m4-cE, 3b83-a1-m4-cF_3b83-a1-m4-cE
3 3b83-a1-m4-cC 99 99 1.0000 1.0000 1.0000 4.66e-68 3b83-a1-m4-cC_3b83-a1-m4-cE
4 3b83-a1-m2-cE 99 99 1.0000 1.0000 1.0000 4.66e-68 3b83-a1-m2-cE_3b83-a1-m8-cG
5 3b83-a1-m1-cC 99 99 1.0000 1.0000 1.0000 4.66e-68 3b83-a1-m1-cC_3b83-a1-m4-cE
6 3b83-a1-m2-cA 95 95 0.9596 1.0000 1.0000 3.90e-64 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m8-cB_3b83-a1-m2-cA
7 3b83-a5-m1-cH 94 94 0.9495 1.0000 1.0000 3.92e-63 3b83-a5-m1-cD_3b83-a5-m1-cH
8 3b83-a1-m8-cH 94 94 0.9495 1.0000 1.0000 3.92e-63 3b83-a1-m5-cD_3b83-a1-m8-cH
9 3b83-a1-m8-cB 92 92 0.9293 1.0000 1.0000 2.42e-61 3b83-a1-m8-cB_3b83-a1-m2-cA, 3b83-a1-m8-cD_3b83-a1-m8-cB
10 3b83-a1-m4-cF 92 92 0.9293 1.0000 1.0000 2.42e-61 3b83-a1-m4-cF_3b83-a1-m4-cE
11 3b83-a5-m1-cD 91 91 0.9192 1.0000 1.0000 1.45e-60 3b83-a5-m1-cD_3b83-a5-m1-cH
12 3b83-a1-m8-cD 91 91 0.9192 1.0000 1.0000 1.45e-60 3b83-a1-m8-cD_3b83-a1-m8-cB
13 3b83-a1-m5-cD 91 91 0.9192 1.0000 1.0000 1.45e-60 3b83-a1-m5-cD_3b83-a1-m8-cH
14 2rbl-a1-m1-cB 89 89 0.3737 0.4157 0.4157 1.92e-20 2rbl-a1-m1-cA_2rbl-a1-m1-cB
15 2rbl-a1-m1-cA 89 89 0.3737 0.4157 0.4157 1.92e-20 2rbl-a1-m1-cA_2rbl-a1-m1-cB
16 5j7k-a1-m1-cA 84 95 0.3333 0.3929 0.3474 8.74e-07 5j7k-a1-m1-cC_5j7k-a1-m1-cA
17 2ck2-a1-m1-cB 96 90 0.2727 0.2812 0.3000 8.90e-07 2ck2-a1-m1-cA_2ck2-a1-m1-cB
18 5j7k-a2-m1-cG 85 95 0.3434 0.4000 0.3579 1.06e-06 5j7k-a2-m1-cD_5j7k-a2-m1-cG
19 2ck2-a1-m1-cA 94 88 0.2727 0.2872 0.3068 2.10e-06 2ck2-a1-m1-cA_2ck2-a1-m1-cB
20 4lpu-a1-m1-cB 93 92 0.2525 0.2688 0.2717 6.15e-05 4lpu-a1-m1-cA_4lpu-a1-m1-cB
21 4lpu-a1-m1-cA 93 92 0.2525 0.2688 0.2717 6.15e-05 4lpu-a1-m1-cA_4lpu-a1-m1-cB
22 5j7k-a1-m1-cC 78 93 0.3030 0.3846 0.3226 8.22e-05 5j7k-a1-m1-cC_5j7k-a1-m1-cA
23 5j7k-a2-m1-cB 90 88 0.3030 0.3333 0.3409 9.09e-05 5j7k-a2-m1-cF_5j7k-a2-m1-cB
24 5myb-a1-m1-cA 190 86 0.2929 0.1526 0.3372 1.09e-04 5myb-a1-m1-cA_5myb-a1-m1-cB
25 5myb-a1-m1-cA 190 71 0.2323 0.1211 0.3239 0.001 5myb-a1-m1-cA_5myb-a1-m1-cB
26 5myb-a1-m1-cB 191 86 0.2929 0.1518 0.3372 1.10e-04 5myb-a1-m1-cA_5myb-a1-m1-cB
27 5myb-a1-m1-cB 191 71 0.2222 0.1152 0.3099 0.012 5myb-a1-m1-cA_5myb-a1-m1-cB
28 3t1w-a1-m2-cA 368 89 0.2727 0.0734 0.3034 1.18e-04 3t1w-a1-m1-cA_3t1w-a1-m2-cA
29 3t1w-a1-m2-cA 368 81 0.2727 0.0734 0.3333 7.72e-04 3t1w-a1-m1-cA_3t1w-a1-m2-cA
30 3t1w-a1-m1-cA 368 89 0.2727 0.0734 0.3034 1.18e-04 3t1w-a1-m1-cA_3t1w-a1-m2-cA
31 3t1w-a1-m1-cA 368 81 0.2727 0.0734 0.3333 7.72e-04 3t1w-a1-m1-cA_3t1w-a1-m2-cA
32 7y8s-a1-m1-cB 288 93 0.2626 0.0903 0.2796 3.43e-04 7y8s-a1-m1-cA_7y8s-a1-m1-cB
33 7y8s-a1-m1-cB 288 27 0.1212 0.0417 0.4444 9.0 7y8s-a1-m1-cA_7y8s-a1-m1-cB
34 5j7k-a2-m1-cF 79 94 0.3030 0.3797 0.3191 4.65e-04 5j7k-a2-m1-cF_5j7k-a2-m1-cB
35 1qg3-a1-m1-cA 195 61 0.2020 0.1026 0.3279 0.005 1qg3-a1-m2-cB_1qg3-a1-m1-cA
36 1qg3-a1-m2-cB 193 61 0.2020 0.1036 0.3279 0.005 1qg3-a1-m2-cB_1qg3-a1-m1-cA
37 5utk-a1-m1-cA 289 76 0.2525 0.0865 0.3289 0.007 5utk-a1-m1-cB_5utk-a1-m1-cA
38 5utk-a1-m1-cA 289 70 0.2222 0.0761 0.3143 0.19 5utk-a1-m1-cB_5utk-a1-m1-cA
39 5utk-a1-m1-cA 289 39 0.1717 0.0588 0.4359 0.95 5utk-a1-m1-cB_5utk-a1-m1-cA
40 5fn8-a2-m3-cA 178 67 0.1919 0.1067 0.2836 0.009 5fn8-a2-m1-cA_5fn8-a2-m3-cA
41 5fn8-a2-m1-cA 178 67 0.1919 0.1067 0.2836 0.009 5fn8-a2-m1-cA_5fn8-a2-m3-cA
42 5utk-a1-m1-cB 280 86 0.2828 0.1000 0.3256 0.018 5utk-a1-m1-cB_5utk-a1-m1-cA
43 5utk-a1-m1-cB 280 37 0.1515 0.0536 0.4054 7.0 5utk-a1-m1-cB_5utk-a1-m1-cA
44 7y8s-a1-m1-cA 275 71 0.1818 0.0655 0.2535 0.081 7y8s-a1-m1-cA_7y8s-a1-m1-cB
45 7y8s-a1-m1-cA 275 27 0.1212 0.0436 0.4444 8.9 7y8s-a1-m1-cA_7y8s-a1-m1-cB
46 4ney-a1-m1-cA 163 21 0.1111 0.0675 0.5238 0.086 4ney-a1-m1-cA_4ney-a1-m1-cB
47 6bqo-a2-m2-cC 95 70 0.1515 0.1579 0.2143 0.093 6bqo-a2-m1-cC_6bqo-a2-m2-cC
48 6bqo-a2-m1-cC 95 70 0.1515 0.1579 0.2143 0.093 6bqo-a2-m1-cC_6bqo-a2-m2-cC
49 3afk-a1-m1-cB 166 58 0.2121 0.1265 0.3621 0.36 3afk-a1-m1-cB_3afk-a1-m1-cA
50 4lsd-a2-m1-cD 93 81 0.2222 0.2366 0.2716 0.49 4lsd-a2-m1-cC_4lsd-a2-m1-cD
51 4lsd-a2-m1-cC 93 81 0.2222 0.2366 0.2716 0.49 4lsd-a2-m1-cC_4lsd-a2-m1-cD
52 1bqu-a1-m1-cA 208 86 0.2525 0.1202 0.2907 0.56 1bqu-a1-m1-cA_1bqu-a1-m1-cB
53 2vkw-a1-m1-cA 197 22 0.1010 0.0508 0.4545 1.1 2vkw-a1-m1-cB_2vkw-a1-m1-cA
54 2vkw-a1-m1-cA 197 43 0.1414 0.0711 0.3256 4.4 2vkw-a1-m1-cB_2vkw-a1-m1-cA
55 2vkw-a1-m1-cB 195 22 0.1010 0.0513 0.4545 1.2 2vkw-a1-m1-cB_2vkw-a1-m1-cA
56 2vkw-a1-m1-cB 195 43 0.1414 0.0718 0.3256 4.2 2vkw-a1-m1-cB_2vkw-a1-m1-cA
57 2vkx-a2-m1-cD 198 22 0.1010 0.0505 0.4545 1.2 2vkx-a2-m1-cC_2vkx-a2-m1-cD
58 2vkx-a2-m1-cD 198 45 0.1414 0.0707 0.3111 3.0 2vkx-a2-m1-cC_2vkx-a2-m1-cD
59 2vkx-a2-m1-cC 198 22 0.1010 0.0505 0.4545 1.2 2vkx-a2-m1-cC_2vkx-a2-m1-cD
60 2vkx-a2-m1-cC 198 45 0.1414 0.0707 0.3111 3.0 2vkx-a2-m1-cC_2vkx-a2-m1-cD
61 3mtr-a1-m1-cA 197 22 0.1010 0.0508 0.4545 1.2 3mtr-a1-m1-cA_3mtr-a1-m1-cB
62 3mtr-a1-m1-cB 197 22 0.1010 0.0508 0.4545 1.3 3mtr-a1-m1-cA_3mtr-a1-m1-cB
63 3fl7-a1-m2-cA 482 23 0.1111 0.0228 0.4783 1.8 3fl7-a1-m1-cA_3fl7-a1-m2-cA
64 3fl7-a1-m1-cA 482 23 0.1111 0.0228 0.4783 1.8 3fl7-a1-m1-cA_3fl7-a1-m2-cA
65 1bqu-a1-m1-cB 215 88 0.2525 0.1163 0.2841 2.9 1bqu-a1-m1-cA_1bqu-a1-m1-cB
66 2v5y-a1-m2-cA 564 36 0.1313 0.0230 0.3611 2.9 2v5y-a1-m1-cA_2v5y-a1-m2-cA
67 2v5y-a1-m1-cA 564 36 0.1313 0.0230 0.3611 2.9 2v5y-a1-m1-cA_2v5y-a1-m2-cA
68 5x83-a1-m1-cD 195 80 0.2020 0.1026 0.2500 3.1 5x83-a1-m1-cD_5x83-a1-m1-cB
69 8d7h-a1-m1-cE 303 35 0.1313 0.0429 0.3714 3.4 8d7h-a1-m1-cA_8d7h-a1-m1-cE
70 8d7h-a1-m1-cA 303 35 0.1313 0.0429 0.3714 3.4 8d7h-a1-m1-cA_8d7h-a1-m1-cE
71 3up1-a1-m1-cB 196 39 0.1212 0.0612 0.3077 3.5 3up1-a1-m1-cB_3up1-a1-m1-cA
72 3h5a-a1-m1-cD 350 31 0.1313 0.0371 0.4194 3.8 3h5a-a1-m1-cD_3h5a-a1-m1-cA, 3h5a-a1-m1-cD_3h5a-a1-m1-cB
73 3up1-a1-m1-cA 201 39 0.1212 0.0597 0.3077 4.1 3up1-a1-m1-cB_3up1-a1-m1-cA
74 8e2d-a1-m1-cB 1968 44 0.1818 0.0091 0.4091 4.2 8e2d-a1-m1-cA_8e2d-a1-m1-cB
75 8e2d-a1-m1-cA 1968 44 0.1818 0.0091 0.4091 4.2 8e2d-a1-m1-cA_8e2d-a1-m1-cB
76 7mrm-a1-m1-cA 365 82 0.2323 0.0630 0.2805 4.7 7mrm-a1-m1-cB_7mrm-a1-m1-cA
77 7mrm-a1-m1-cB 360 82 0.2323 0.0639 0.2805 4.8 7mrm-a1-m1-cB_7mrm-a1-m1-cA
78 3sy8-a2-m1-cD 371 11 0.0808 0.0216 0.7273 5.1 3sy8-a2-m1-cD_3sy8-a2-m1-cB
79 7zqb-a1-m1-cj 527 30 0.1414 0.0266 0.4667 5.6 7zqb-a1-m1-ci_7zqb-a1-m1-cj
80 7zqb-a1-m1-ci 527 30 0.1414 0.0266 0.4667 5.6 7zqb-a1-m1-ci_7zqb-a1-m1-cj
81 7zn4-a1-m1-cg 589 30 0.1414 0.0238 0.4667 7.3 7zn4-a1-m1-cg_7zn4-a1-m1-ce, 7zn4-a1-m1-cg_7zn4-a1-m1-cf
82 5e7t-a1-m3-cA 129 22 0.0808 0.0620 0.3636 9.1 5e7t-a1-m2-cA_5e7t-a1-m3-cA
83 5e7t-a1-m2-cA 129 22 0.0808 0.0620 0.3636 9.1 5e7t-a1-m2-cA_5e7t-a1-m3-cA
84 4yfg-a1-m1-cB 481 75 0.2121 0.0437 0.2800 9.6 4yfg-a1-m1-cA_4yfg-a1-m1-cB
85 4yfg-a1-m1-cA 481 75 0.2121 0.0437 0.2800 9.6 4yfg-a1-m1-cA_4yfg-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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