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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=64)
MNAIDIAINKLGSVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTNGAVICRELRP
DVFG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3bd1-a2-m1-cA 65 64 1.0000 0.9846 1.0000 7.54e-41 3bd1-a2-m1-cB_3bd1-a2-m1-cA, 3bd1-a2-m1-cC_3bd1-a2-m1-cA
2 3bd1-a2-m1-cC 64 64 1.0000 1.0000 1.0000 8.28e-41 3bd1-a2-m1-cC_3bd1-a2-m1-cA
3 3bd1-a2-m1-cB 63 63 0.9844 1.0000 1.0000 6.02e-40 3bd1-a2-m1-cB_3bd1-a2-m1-cA
4 2pij-a1-m1-cA 57 53 0.3750 0.4211 0.4528 2.17e-05 2pij-a1-m1-cA_2pij-a1-m1-cB
5 2pij-a1-m1-cB 58 53 0.3750 0.4138 0.4528 2.22e-05 2pij-a1-m1-cA_2pij-a1-m1-cB
6 2hin-a1-m1-cA 66 39 0.2031 0.1970 0.3333 0.080 2hin-a1-m1-cB_2hin-a1-m1-cA
7 2hin-a1-m1-cB 64 39 0.2031 0.2031 0.3333 0.083 2hin-a1-m1-cB_2hin-a1-m1-cA
8 6juy-a1-m1-cC 656 54 0.2344 0.0229 0.2778 4.7 6juy-a1-m1-cD_6juy-a1-m1-cC
9 6j0e-a1-m1-cB 125 51 0.2188 0.1120 0.2745 5.2 6j0e-a1-m1-cA_6j0e-a1-m1-cB
10 6j0e-a1-m1-cA 124 51 0.2188 0.1129 0.2745 5.4 6j0e-a1-m1-cA_6j0e-a1-m1-cB
11 6juy-a1-m1-cD 623 55 0.2344 0.0241 0.2727 5.5 6juy-a1-m1-cD_6juy-a1-m1-cA, 6juy-a1-m1-cD_6juy-a1-m1-cB, 6juy-a1-m1-cD_6juy-a1-m1-cC
12 6juy-a1-m1-cB 637 55 0.2344 0.0235 0.2727 5.5 6juy-a1-m1-cD_6juy-a1-m1-cB
13 6juy-a1-m1-cA 639 55 0.2344 0.0235 0.2727 5.5 6juy-a1-m1-cD_6juy-a1-m1-cA
14 2e7p-a1-m1-cD 101 14 0.1250 0.0792 0.5714 6.2 2e7p-a1-m1-cD_2e7p-a1-m1-cA, 2e7p-a1-m1-cD_2e7p-a1-m1-cC
15 2e7p-a1-m1-cC 115 14 0.1250 0.0696 0.5714 6.4 2e7p-a1-m1-cD_2e7p-a1-m1-cC
16 2e7p-a1-m1-cA 107 14 0.1250 0.0748 0.5714 6.7 2e7p-a1-m1-cD_2e7p-a1-m1-cA
17 4ir8-a1-m1-cB 324 56 0.2969 0.0586 0.3393 9.7 4ir8-a1-m1-cA_4ir8-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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