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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA
RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQRLPA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4dky-a1-m2-cA 97 97 1.0000 1.0000 1.0000 1.45e-65 4dky-a1-m1-cA_4dky-a1-m2-cA
2 4dky-a1-m1-cA 97 97 1.0000 1.0000 1.0000 1.45e-65 4dky-a1-m1-cA_4dky-a1-m2-cA
3 1hue-a1-m1-cB 90 89 0.4433 0.4778 0.4831 5.80e-25 1hue-a1-m1-cA_1hue-a1-m1-cB
4 1hue-a1-m1-cA 90 89 0.4433 0.4778 0.4831 5.80e-25 1hue-a1-m1-cA_1hue-a1-m1-cB
5 1p71-a1-m1-cA 94 90 0.4124 0.4255 0.4444 1.37e-22 1p71-a1-m1-cB_1p71-a1-m1-cA
6 1p71-a1-m1-cB 93 90 0.4124 0.4301 0.4444 1.39e-22 1p71-a1-m1-cB_1p71-a1-m1-cA
7 3rhi-a2-m1-cC 90 89 0.3918 0.4222 0.4270 2.00e-21 3rhi-a2-m1-cD_3rhi-a2-m1-cC
8 6o8q-a1-m1-cH 91 89 0.3814 0.4066 0.4157 1.88e-20 6o8q-a1-m1-cG_6o8q-a1-m1-cH
9 6o8q-a1-m1-cG 91 89 0.3814 0.4066 0.4157 1.88e-20 6o8q-a1-m1-cG_6o8q-a1-m1-cH
10 4qjn-a2-m1-cD 90 89 0.3608 0.3889 0.3933 7.91e-19 4qjn-a2-m1-cB_4qjn-a2-m1-cD
11 4qjn-a2-m1-cB 90 89 0.3608 0.3889 0.3933 7.91e-19 4qjn-a2-m1-cB_4qjn-a2-m1-cD
12 5lvt-a2-m1-cD 91 88 0.3711 0.3956 0.4091 2.36e-17 5lvt-a2-m1-cB_5lvt-a2-m1-cD
13 5lvt-a2-m1-cB 91 88 0.3711 0.3956 0.4091 2.36e-17 5lvt-a2-m1-cB_5lvt-a2-m1-cD
14 1huu-a4-m3-cB 74 89 0.3711 0.4865 0.4045 4.53e-15 1huu-a4-m1-cB_1huu-a4-m3-cB
15 1huu-a4-m1-cB 74 89 0.3711 0.4865 0.4045 4.53e-15 1huu-a4-m1-cB_1huu-a4-m3-cB
16 3rhi-a2-m1-cD 82 89 0.3299 0.3902 0.3596 4.45e-13 3rhi-a2-m1-cD_3rhi-a2-m1-cC
17 6n2l-a1-m2-cA 88 90 0.3196 0.3523 0.3444 1.25e-11 6n2l-a1-m1-cA_6n2l-a1-m2-cA
18 6n2l-a1-m1-cA 88 90 0.3196 0.3523 0.3444 1.25e-11 6n2l-a1-m1-cA_6n2l-a1-m2-cA
19 5l8z-a1-m2-cA 95 88 0.3402 0.3474 0.3750 1.97e-11 5l8z-a1-m1-cA_5l8z-a1-m2-cA
20 5l8z-a1-m1-cA 95 88 0.3402 0.3474 0.3750 1.97e-11 5l8z-a1-m1-cA_5l8z-a1-m2-cA
21 5fbm-a1-m1-cB 83 88 0.3196 0.3735 0.3523 2.41e-10 5fbm-a1-m1-cA_5fbm-a1-m1-cB
22 5eka-a1-m2-cA 85 86 0.2887 0.3294 0.3256 8.31e-10 5eka-a1-m1-cA_5eka-a1-m2-cA
23 5eka-a1-m1-cA 85 86 0.2887 0.3294 0.3256 8.31e-10 5eka-a1-m1-cA_5eka-a1-m2-cA
24 5fbm-a1-m1-cA 83 88 0.3093 0.3614 0.3409 1.17e-09 5fbm-a1-m1-cA_5fbm-a1-m1-cB
25 2np2-a1-m1-cB 102 88 0.2680 0.2549 0.2955 2.86e-09 2np2-a1-m1-cA_2np2-a1-m1-cB
26 2np2-a1-m1-cA 102 88 0.2680 0.2549 0.2955 2.86e-09 2np2-a1-m1-cA_2np2-a1-m1-cB
27 1exe-a1-m1-cB 99 91 0.2990 0.2929 0.3187 3.33e-09 1exe-a1-m1-cA_1exe-a1-m1-cB
28 1exe-a1-m1-cA 99 91 0.2990 0.2929 0.3187 3.33e-09 1exe-a1-m1-cA_1exe-a1-m1-cB
29 1wtu-a1-m1-cB 99 91 0.2784 0.2727 0.2967 4.89e-07 1wtu-a1-m1-cA_1wtu-a1-m1-cB
30 1wtu-a1-m1-cA 99 91 0.2784 0.2727 0.2967 4.89e-07 1wtu-a1-m1-cA_1wtu-a1-m1-cB
31 4p3v-a1-m2-cA 72 92 0.2784 0.3750 0.2935 2.50e-06 4p3v-a1-m1-cA_4p3v-a1-m2-cA
32 4p3v-a1-m1-cA 72 92 0.2784 0.3750 0.2935 2.50e-06 4p3v-a1-m1-cA_4p3v-a1-m2-cA
33 1b8z-a1-m1-cB 67 86 0.2784 0.4030 0.3140 1.87e-05 1b8z-a1-m1-cA_1b8z-a1-m1-cB
34 1b8z-a1-m1-cA 67 86 0.2784 0.4030 0.3140 1.87e-05 1b8z-a1-m1-cA_1b8z-a1-m1-cB
35 5y4g-a1-m1-cB 292 42 0.1649 0.0548 0.3810 1.3 5y4g-a1-m1-cB_5y4g-a1-m1-cA
36 5y4g-a1-m1-cA 295 42 0.1649 0.0542 0.3810 1.3 5y4g-a1-m1-cB_5y4g-a1-m1-cA
37 4h3u-a1-m1-cB 127 29 0.1443 0.1102 0.4828 5.4 4h3u-a1-m1-cA_4h3u-a1-m1-cB
38 4h3u-a1-m1-cA 127 29 0.1443 0.1102 0.4828 5.4 4h3u-a1-m1-cA_4h3u-a1-m1-cB
39 6dru-a2-m1-cB 717 51 0.1649 0.0223 0.3137 5.9 6dru-a2-m1-cB_6dru-a2-m1-cA
40 6dru-a1-m2-cB 717 51 0.1649 0.0223 0.3137 5.9 6dru-a1-m1-cB_6dru-a1-m2-cB, 6dru-a1-m2-cB_6dru-a1-m1-cA
41 6dru-a1-m1-cB 717 51 0.1649 0.0223 0.3137 5.9 6dru-a1-m1-cB_6dru-a1-m2-cB
42 6dru-a2-m1-cA 718 51 0.1649 0.0223 0.3137 5.9 6dru-a2-m1-cB_6dru-a2-m1-cA
43 6dru-a1-m1-cA 718 51 0.1649 0.0223 0.3137 5.9 6dru-a1-m2-cB_6dru-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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