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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
MNKAHFEVFVDAADKYRWRLVHDNGNILADSGEGYASKQKAKQGIESVKRNAPDADVIEA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6q2z-a1-m1-cB 60 60 1.0000 1.0000 1.0000 1.26e-39 6q2z-a1-m1-cA_6q2z-a1-m1-cB
2 6q2z-a1-m1-cA 60 60 1.0000 1.0000 1.0000 1.26e-39 6q2z-a1-m1-cA_6q2z-a1-m1-cB
3 2k7i-a1-m1-cB 62 54 0.3833 0.3710 0.4259 2.36e-09 2k7i-a1-m1-cA_2k7i-a1-m1-cB
4 2k7i-a1-m1-cA 62 54 0.3833 0.3710 0.4259 2.36e-09 2k7i-a1-m1-cA_2k7i-a1-m1-cB
5 3bid-a4-m1-cG 59 58 0.3833 0.3898 0.3966 3.60e-08 3bid-a4-m1-cH_3bid-a4-m1-cG
6 3bid-a4-m1-cH 56 55 0.3667 0.3929 0.4000 4.48e-08 3bid-a4-m1-cH_3bid-a4-m1-cG
7 5imy-a1-m1-cA 474 28 0.2000 0.0253 0.4286 2.2 5imy-a1-m1-cB_5imy-a1-m1-cA
8 5imy-a1-m1-cB 472 28 0.2000 0.0254 0.4286 2.2 5imy-a1-m1-cB_5imy-a1-m1-cA
9 3k21-a1-m2-cA 178 27 0.1500 0.0506 0.3333 5.3 3k21-a1-m1-cA_3k21-a1-m2-cA
10 3k21-a1-m1-cA 178 27 0.1500 0.0506 0.3333 5.3 3k21-a1-m1-cA_3k21-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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