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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG
RNPKTNEKMEIPATRVPAFSAGKLFREKVAPPK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1p71-a1-m1-cA 94 93 1.0000 0.9894 1.0000 2.63e-62 1p71-a1-m1-cB_1p71-a1-m1-cA
2 1p71-a1-m1-cB 93 93 1.0000 1.0000 1.0000 3.58e-62 1p71-a1-m1-cB_1p71-a1-m1-cA
3 1hue-a1-m1-cB 90 89 0.5269 0.5444 0.5506 1.23e-30 1hue-a1-m1-cA_1hue-a1-m1-cB
4 1hue-a1-m1-cA 90 89 0.5269 0.5444 0.5506 1.23e-30 1hue-a1-m1-cA_1hue-a1-m1-cB
5 4qjn-a2-m1-cD 90 89 0.4946 0.5111 0.5169 8.03e-30 4qjn-a2-m1-cB_4qjn-a2-m1-cD
6 4qjn-a2-m1-cB 90 89 0.4946 0.5111 0.5169 8.03e-30 4qjn-a2-m1-cB_4qjn-a2-m1-cD
7 3rhi-a2-m1-cC 90 89 0.4839 0.5000 0.5056 2.15e-28 3rhi-a2-m1-cD_3rhi-a2-m1-cC
8 5lvt-a2-m1-cD 91 88 0.4731 0.4835 0.5000 1.34e-24 5lvt-a2-m1-cB_5lvt-a2-m1-cD
9 5lvt-a2-m1-cB 91 88 0.4731 0.4835 0.5000 1.34e-24 5lvt-a2-m1-cB_5lvt-a2-m1-cD
10 6o8q-a1-m1-cH 91 89 0.4516 0.4615 0.4719 1.58e-24 6o8q-a1-m1-cG_6o8q-a1-m1-cH
11 6o8q-a1-m1-cG 91 89 0.4516 0.4615 0.4719 1.58e-24 6o8q-a1-m1-cG_6o8q-a1-m1-cH
12 3rhi-a2-m1-cD 82 89 0.4194 0.4756 0.4382 4.07e-20 3rhi-a2-m1-cD_3rhi-a2-m1-cC
13 6n2l-a1-m2-cA 88 89 0.4409 0.4659 0.4607 1.75e-18 6n2l-a1-m1-cA_6n2l-a1-m2-cA
14 6n2l-a1-m1-cA 88 89 0.4409 0.4659 0.4607 1.75e-18 6n2l-a1-m1-cA_6n2l-a1-m2-cA
15 4dky-a1-m2-cA 97 90 0.4301 0.4124 0.4444 6.58e-18 4dky-a1-m1-cA_4dky-a1-m2-cA
16 4dky-a1-m1-cA 97 90 0.4301 0.4124 0.4444 6.58e-18 4dky-a1-m1-cA_4dky-a1-m2-cA
17 5eka-a1-m2-cA 85 89 0.4086 0.4471 0.4270 2.08e-16 5eka-a1-m1-cA_5eka-a1-m2-cA
18 5eka-a1-m1-cA 85 89 0.4086 0.4471 0.4270 2.08e-16 5eka-a1-m1-cA_5eka-a1-m2-cA
19 1huu-a4-m3-cB 74 89 0.3978 0.5000 0.4157 2.77e-16 1huu-a4-m1-cB_1huu-a4-m3-cB
20 1huu-a4-m1-cB 74 89 0.3978 0.5000 0.4157 2.77e-16 1huu-a4-m1-cB_1huu-a4-m3-cB
21 5fbm-a1-m1-cB 83 88 0.3871 0.4337 0.4091 1.21e-15 5fbm-a1-m1-cA_5fbm-a1-m1-cB
22 5l8z-a1-m2-cA 95 88 0.3656 0.3579 0.3864 5.24e-15 5l8z-a1-m1-cA_5l8z-a1-m2-cA
23 5l8z-a1-m1-cA 95 88 0.3656 0.3579 0.3864 5.24e-15 5l8z-a1-m1-cA_5l8z-a1-m2-cA
24 5fbm-a1-m1-cA 83 88 0.3763 0.4217 0.3977 7.30e-15 5fbm-a1-m1-cA_5fbm-a1-m1-cB
25 1exe-a1-m1-cB 99 71 0.3118 0.2929 0.4085 3.89e-12 1exe-a1-m1-cA_1exe-a1-m1-cB
26 1exe-a1-m1-cA 99 71 0.3118 0.2929 0.4085 3.89e-12 1exe-a1-m1-cA_1exe-a1-m1-cB
27 4p3v-a1-m2-cA 72 89 0.3226 0.4167 0.3371 2.87e-11 4p3v-a1-m1-cA_4p3v-a1-m2-cA
28 4p3v-a1-m1-cA 72 89 0.3226 0.4167 0.3371 2.87e-11 4p3v-a1-m1-cA_4p3v-a1-m2-cA
29 1wtu-a1-m1-cB 99 71 0.3011 0.2828 0.3944 3.50e-11 1wtu-a1-m1-cA_1wtu-a1-m1-cB
30 1wtu-a1-m1-cA 99 71 0.3011 0.2828 0.3944 3.50e-11 1wtu-a1-m1-cA_1wtu-a1-m1-cB
31 1b8z-a1-m1-cB 67 89 0.3978 0.5522 0.4157 9.86e-10 1b8z-a1-m1-cA_1b8z-a1-m1-cB
32 1b8z-a1-m1-cA 67 89 0.3978 0.5522 0.4157 9.86e-10 1b8z-a1-m1-cA_1b8z-a1-m1-cB
33 2np2-a1-m1-cB 102 93 0.3118 0.2843 0.3118 2.38e-08 2np2-a1-m1-cA_2np2-a1-m1-cB
34 2np2-a1-m1-cA 102 93 0.3118 0.2843 0.3118 2.38e-08 2np2-a1-m1-cA_2np2-a1-m1-cB
35 2ndp-a1-m1-cB 99 93 0.2366 0.2222 0.2366 1.65e-04 2ndp-a1-m1-cA_2ndp-a1-m1-cB
36 2ndp-a1-m1-cA 99 93 0.2366 0.2222 0.2366 1.65e-04 2ndp-a1-m1-cA_2ndp-a1-m1-cB
37 6lmj-a1-m1-cB 98 76 0.2151 0.2041 0.2632 0.023 6lmj-a1-m1-cB_6lmj-a1-m1-cA
38 6lmj-a1-m1-cA 99 76 0.2151 0.2020 0.2632 0.023 6lmj-a1-m1-cB_6lmj-a1-m1-cA
39 1yrp-a1-m1-cB 275 29 0.1290 0.0436 0.4138 5.0 1yrp-a1-m1-cA_1yrp-a1-m1-cB
40 1yrp-a1-m1-cA 275 29 0.1290 0.0436 0.4138 5.0 1yrp-a1-m1-cA_1yrp-a1-m1-cB
41 5vja-a1-m1-cB 266 29 0.1290 0.0451 0.4138 5.6 5vja-a1-m1-cD_5vja-a1-m1-cB
42 5a6o-a1-m1-cB 266 29 0.1290 0.0451 0.4138 5.7 5a6o-a1-m1-cA_5a6o-a1-m1-cB
43 5a6o-a1-m1-cA 265 29 0.1290 0.0453 0.4138 5.8 5a6o-a1-m1-cA_5a6o-a1-m1-cB
44 3zxt-a2-m1-cC 259 44 0.1613 0.0579 0.3409 8.5 3zxt-a2-m1-cD_3zxt-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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