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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MNKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKG
FNPQTQEALEIAPSVGVSVKPGESLKKAAEGLKYEDFAK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1exe-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.06e-67 1exe-a1-m1-cA_1exe-a1-m1-cB
2 1exe-a1-m1-cA 99 99 1.0000 1.0000 1.0000 1.06e-67 1exe-a1-m1-cA_1exe-a1-m1-cB
3 1wtu-a1-m1-cB 99 99 0.9798 0.9798 0.9798 1.07e-65 1wtu-a1-m1-cA_1wtu-a1-m1-cB
4 1wtu-a1-m1-cA 99 99 0.9798 0.9798 0.9798 1.07e-65 1wtu-a1-m1-cA_1wtu-a1-m1-cB
5 1hue-a1-m1-cB 90 88 0.4444 0.4889 0.5000 4.77e-21 1hue-a1-m1-cA_1hue-a1-m1-cB
6 1hue-a1-m1-cA 90 88 0.4444 0.4889 0.5000 4.77e-21 1hue-a1-m1-cA_1hue-a1-m1-cB
7 5lvt-a2-m1-cD 91 87 0.4040 0.4396 0.4598 2.80e-18 5lvt-a2-m1-cB_5lvt-a2-m1-cD
8 5lvt-a2-m1-cB 91 87 0.4040 0.4396 0.4598 2.80e-18 5lvt-a2-m1-cB_5lvt-a2-m1-cD
9 3rhi-a2-m1-cC 90 88 0.3939 0.4333 0.4432 5.27e-16 3rhi-a2-m1-cD_3rhi-a2-m1-cC
10 4qjn-a2-m1-cD 90 88 0.3737 0.4111 0.4205 8.73e-15 4qjn-a2-m1-cB_4qjn-a2-m1-cD
11 4qjn-a2-m1-cB 90 88 0.3737 0.4111 0.4205 8.73e-15 4qjn-a2-m1-cB_4qjn-a2-m1-cD
12 1p71-a1-m1-cA 94 71 0.2929 0.3085 0.4085 3.84e-12 1p71-a1-m1-cB_1p71-a1-m1-cA
13 1p71-a1-m1-cB 93 71 0.2929 0.3118 0.4085 4.14e-12 1p71-a1-m1-cB_1p71-a1-m1-cA
14 6o8q-a1-m1-cH 91 88 0.3535 0.3846 0.3977 1.63e-11 6o8q-a1-m1-cG_6o8q-a1-m1-cH
15 6o8q-a1-m1-cG 91 88 0.3535 0.3846 0.3977 1.63e-11 6o8q-a1-m1-cG_6o8q-a1-m1-cH
16 1huu-a4-m3-cB 74 65 0.3030 0.4054 0.4615 1.85e-10 1huu-a4-m1-cB_1huu-a4-m3-cB
17 1huu-a4-m1-cB 74 65 0.3030 0.4054 0.4615 1.85e-10 1huu-a4-m1-cB_1huu-a4-m3-cB
18 3rhi-a2-m1-cD 82 88 0.3333 0.4024 0.3750 1.48e-08 3rhi-a2-m1-cD_3rhi-a2-m1-cC
19 6n2l-a1-m2-cA 88 60 0.2525 0.2841 0.4167 2.89e-08 6n2l-a1-m1-cA_6n2l-a1-m2-cA
20 6n2l-a1-m1-cA 88 60 0.2525 0.2841 0.4167 2.89e-08 6n2l-a1-m1-cA_6n2l-a1-m2-cA
21 4dky-a1-m2-cA 97 91 0.2929 0.2990 0.3187 6.80e-07 4dky-a1-m1-cA_4dky-a1-m2-cA
22 4dky-a1-m1-cA 97 91 0.2929 0.2990 0.3187 6.80e-07 4dky-a1-m1-cA_4dky-a1-m2-cA
23 5eka-a1-m2-cA 85 86 0.3030 0.3529 0.3488 4.31e-06 5eka-a1-m1-cA_5eka-a1-m2-cA
24 5eka-a1-m1-cA 85 86 0.3030 0.3529 0.3488 4.31e-06 5eka-a1-m1-cA_5eka-a1-m2-cA
25 5fbm-a1-m1-cB 83 87 0.3030 0.3614 0.3448 9.74e-06 5fbm-a1-m1-cA_5fbm-a1-m1-cB
26 5fbm-a1-m1-cA 83 58 0.2222 0.2651 0.3793 6.31e-05 5fbm-a1-m1-cA_5fbm-a1-m1-cB
27 1b8z-a1-m1-cB 67 47 0.2121 0.3134 0.4468 5.46e-04 1b8z-a1-m1-cA_1b8z-a1-m1-cB
28 1b8z-a1-m1-cA 67 47 0.2121 0.3134 0.4468 5.46e-04 1b8z-a1-m1-cA_1b8z-a1-m1-cB
29 4p3v-a1-m2-cA 72 47 0.1616 0.2222 0.3404 0.001 4p3v-a1-m1-cA_4p3v-a1-m2-cA
30 4p3v-a1-m1-cA 72 47 0.1616 0.2222 0.3404 0.001 4p3v-a1-m1-cA_4p3v-a1-m2-cA
31 5l8z-a1-m2-cA 95 92 0.3333 0.3474 0.3587 0.002 5l8z-a1-m1-cA_5l8z-a1-m2-cA
32 5l8z-a1-m1-cA 95 92 0.3333 0.3474 0.3587 0.002 5l8z-a1-m1-cA_5l8z-a1-m2-cA
33 6lmj-a1-m1-cA 99 74 0.2222 0.2222 0.2973 0.004 6lmj-a1-m1-cB_6lmj-a1-m1-cA
34 6lmj-a1-m1-cB 98 74 0.2222 0.2245 0.2973 0.004 6lmj-a1-m1-cB_6lmj-a1-m1-cA
35 2ndp-a1-m1-cB 99 71 0.1717 0.1717 0.2394 0.018 2ndp-a1-m1-cA_2ndp-a1-m1-cB
36 2ndp-a1-m1-cA 99 71 0.1717 0.1717 0.2394 0.018 2ndp-a1-m1-cA_2ndp-a1-m1-cB
37 6l5j-a2-m1-cC 204 47 0.1515 0.0735 0.3191 0.46 6l5j-a2-m1-cD_6l5j-a2-m1-cC
38 6l5j-a2-m1-cD 197 47 0.1515 0.0761 0.3191 0.50 6l5j-a2-m1-cD_6l5j-a2-m1-cC
39 4r7y-a1-m3-cB 591 38 0.1414 0.0237 0.3684 0.67 4r7y-a1-m3-cA_4r7y-a1-m3-cB
40 4r7y-a1-m3-cA 591 38 0.1414 0.0237 0.3684 0.67 4r7y-a1-m3-cA_4r7y-a1-m3-cB
41 2np2-a1-m1-cB 102 97 0.1919 0.1863 0.1959 1.5 2np2-a1-m1-cA_2np2-a1-m1-cB
42 2np2-a1-m1-cA 102 97 0.1919 0.1863 0.1959 1.5 2np2-a1-m1-cA_2np2-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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