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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
MPHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFP
YDKCKDKYGKPNKRKGFNEGLWEIQNNPHASYS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3qby-a1-m1-cA 93 93 1.0000 1.0000 1.0000 1.25e-65 3qby-a1-m1-cB_3qby-a1-m1-cA, 3qby-a1-m1-cC_3qby-a1-m1-cA
2 3qby-a1-m1-cB 83 90 0.8925 1.0000 0.9222 5.05e-55 3qby-a1-m1-cB_3qby-a1-m1-cA
3 6iiq-a1-m1-cA 99 92 0.7742 0.7273 0.7826 2.48e-50 6iiq-a1-m1-cB_6iiq-a1-m1-cA
4 6iiq-a1-m1-cB 98 92 0.7742 0.7347 0.7826 3.03e-50 6iiq-a1-m1-cB_6iiq-a1-m1-cA
5 3qby-a1-m1-cC 76 85 0.8172 1.0000 0.8941 2.12e-49 3qby-a1-m1-cC_3qby-a1-m1-cA
6 2nlu-a1-m1-cB 100 89 0.7097 0.6600 0.7416 4.81e-47 2nlu-a1-m1-cA_2nlu-a1-m1-cB
7 2nlu-a1-m1-cA 100 89 0.7097 0.6600 0.7416 4.81e-47 2nlu-a1-m1-cA_2nlu-a1-m1-cB
8 5xsk-a1-m1-cB 91 84 0.6989 0.7143 0.7738 1.51e-46 5xsk-a1-m1-cA_5xsk-a1-m1-cB
9 5xsk-a1-m1-cA 90 84 0.6989 0.7222 0.7738 1.84e-46 5xsk-a1-m1-cA_5xsk-a1-m1-cB
10 4rxj-a1-m2-cA 108 82 0.2366 0.2037 0.2683 0.001 4rxj-a1-m1-cA_4rxj-a1-m2-cA
11 4rxj-a1-m1-cA 108 82 0.2366 0.2037 0.2683 0.001 4rxj-a1-m1-cA_4rxj-a1-m2-cA
12 5nv2-a1-m1-cB 133 21 0.1183 0.0827 0.5238 0.37 5nv2-a1-m1-cA_5nv2-a1-m1-cB
13 5nv2-a1-m1-cA 133 21 0.1183 0.0827 0.5238 0.37 5nv2-a1-m1-cA_5nv2-a1-m1-cB
14 3pmi-a5-m1-cC 118 82 0.2688 0.2119 0.3049 2.2 3pmi-a5-m1-cC_3pmi-a5-m1-cA, 3pmi-a5-m1-cC_3pmi-a5-m2-cB
15 3pmi-a5-m2-cB 119 82 0.2688 0.2101 0.3049 2.2 3pmi-a5-m1-cA_3pmi-a5-m2-cB, 3pmi-a5-m1-cC_3pmi-a5-m2-cB
16 3pmi-a5-m1-cA 119 82 0.2688 0.2101 0.3049 2.2 3pmi-a5-m1-cA_3pmi-a5-m2-cB, 3pmi-a5-m1-cC_3pmi-a5-m1-cA
17 3i44-a1-m2-cA 476 21 0.1075 0.0210 0.4762 7.1 3i44-a1-m1-cA_3i44-a1-m2-cA
18 3i44-a1-m1-cA 476 21 0.1075 0.0210 0.4762 7.1 3i44-a1-m1-cA_3i44-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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