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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=82)
MPLFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEI
VKKACEELLVNPVVEEYEVREL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3d54-a3-m1-cC 82 82 1.0000 1.0000 1.0000 1.86e-53 3d54-a3-m1-cB_3d54-a3-m1-cC
2 3d54-a3-m1-cB 82 82 1.0000 1.0000 1.0000 1.86e-53 3d54-a3-m1-cB_3d54-a3-m1-cC
3 1vq3-a1-m1-cA 86 82 0.9878 0.9419 0.9878 6.16e-53 1vq3-a1-m1-cD_1vq3-a1-m1-cA
4 1vq3-a1-m1-cD 84 82 0.9878 0.9643 0.9878 7.39e-53 1vq3-a1-m1-cD_1vq3-a1-m1-cA
5 2zw2-a1-m1-cB 85 79 0.3171 0.3059 0.3291 9.60e-09 2zw2-a1-m1-cA_2zw2-a1-m1-cB
6 2zw2-a1-m1-cA 85 79 0.3171 0.3059 0.3291 9.60e-09 2zw2-a1-m1-cA_2zw2-a1-m1-cB
7 1twj-a1-m1-cD 80 75 0.2805 0.2875 0.3067 2.00e-08 1twj-a1-m1-cA_1twj-a1-m1-cD
8 1twj-a1-m1-cA 80 75 0.2805 0.2875 0.3067 2.00e-08 1twj-a1-m1-cA_1twj-a1-m1-cD
9 1t4a-a1-m2-cB 76 74 0.2683 0.2895 0.2973 5.35e-06 1t4a-a1-m1-cB_1t4a-a1-m2-cB, 1t4a-a1-m2-cA_1t4a-a1-m2-cB
10 1t4a-a1-m2-cA 76 74 0.2683 0.2895 0.2973 5.35e-06 1t4a-a1-m1-cA_1t4a-a1-m2-cA, 1t4a-a1-m2-cA_1t4a-a1-m2-cB
11 1t4a-a1-m1-cB 76 74 0.2683 0.2895 0.2973 5.35e-06 1t4a-a1-m1-cB_1t4a-a1-m2-cB
12 1t4a-a1-m1-cA 76 74 0.2683 0.2895 0.2973 5.35e-06 1t4a-a1-m1-cA_1t4a-a1-m2-cA
13 2dgb-a1-m1-cD 81 72 0.2927 0.2963 0.3333 1.36e-05 2dgb-a1-m1-cA_2dgb-a1-m1-cD
14 2dgb-a1-m1-cA 81 72 0.2927 0.2963 0.3333 1.36e-05 2dgb-a1-m1-cA_2dgb-a1-m1-cD
15 2yx5-a1-m4-cA 82 78 0.3171 0.3171 0.3333 5.56e-04 2yx5-a1-m1-cA_2yx5-a1-m4-cA, 2yx5-a1-m2-cA_2yx5-a1-m4-cA, 2yx5-a1-m3-cA_2yx5-a1-m4-cA
16 2yx5-a1-m3-cA 82 78 0.3171 0.3171 0.3333 5.56e-04 2yx5-a1-m3-cA_2yx5-a1-m4-cA
17 2yx5-a1-m2-cA 82 78 0.3171 0.3171 0.3333 5.56e-04 2yx5-a1-m2-cA_2yx5-a1-m4-cA
18 2yx5-a1-m1-cA 82 78 0.3171 0.3171 0.3333 5.56e-04 2yx5-a1-m1-cA_2yx5-a1-m4-cA
19 1gtd-a1-m2-cA 76 62 0.2439 0.2632 0.3226 3.3 1gtd-a1-m2-cA_1gtd-a1-m2-cB
20 1gtd-a1-m1-cA 76 62 0.2439 0.2632 0.3226 3.3 1gtd-a1-m1-cA_1gtd-a1-m2-cB
21 7cyi-a2-m1-cC 375 51 0.1829 0.0400 0.2941 3.3 7cyi-a2-m1-cB_7cyi-a2-m1-cC
22 7cyi-a2-m1-cB 375 51 0.1829 0.0400 0.2941 3.3 7cyi-a2-m1-cB_7cyi-a2-m1-cC
23 1gtd-a1-m2-cB 79 62 0.2439 0.2532 0.3226 3.3 1gtd-a1-m1-cA_1gtd-a1-m2-cB, 1gtd-a1-m2-cA_1gtd-a1-m2-cB
24 5c3c-a1-m3-cB 235 72 0.2073 0.0723 0.2361 4.4 5c3c-a1-m3-cA_5c3c-a1-m3-cB
25 5t55-a1-m1-cB 229 47 0.1341 0.0480 0.2340 4.9 5t55-a1-m1-cA_5t55-a1-m1-cB
26 5t55-a1-m1-cA 229 47 0.1341 0.0480 0.2340 4.9 5t55-a1-m1-cA_5t55-a1-m1-cB
27 4cog-a2-m1-cD 207 35 0.1707 0.0676 0.4000 7.2 4cog-a2-m1-cC_4cog-a2-m1-cD
28 4cog-a2-m1-cC 207 35 0.1707 0.0676 0.4000 7.2 4cog-a2-m1-cC_4cog-a2-m1-cD
29 5c3c-a1-m3-cA 231 46 0.1707 0.0606 0.3043 7.7 5c3c-a1-m3-cA_5c3c-a1-m3-cB
30 4o7j-a1-m1-cA 157 40 0.1098 0.0573 0.2250 7.8 4o7j-a1-m1-cA_4o7j-a1-m1-cB
31 4o7j-a1-m1-cB 158 40 0.1098 0.0570 0.2250 8.4 4o7j-a1-m1-cA_4o7j-a1-m1-cB
32 4rih-a1-m1-cA 368 28 0.1707 0.0380 0.5000 9.6 4rih-a1-m1-cA_4rih-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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