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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
MQPLSPEKHEEAEIAAGFLSAMANPKRLLILDSLVKEEMAVGALANKVGLSQSALSQHLS
KLRAQNLVSTRRDAQTIYYSSSSDSVMKILGALSEIYG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4omz-a2-m1-cC 100 98 1.0000 0.9800 1.0000 4.43e-67 4omz-a2-m1-cD_4omz-a2-m1-cC
2 4omz-a2-m1-cD 98 98 1.0000 1.0000 1.0000 5.41e-67 4omz-a2-m1-cD_4omz-a2-m1-cC
3 4ooi-a1-m1-cA 95 83 0.4082 0.4211 0.4819 3.01e-20 4ooi-a1-m1-cA_4ooi-a1-m1-cB
4 4ooi-a1-m1-cB 96 83 0.4082 0.4167 0.4819 3.49e-20 4ooi-a1-m1-cA_4ooi-a1-m1-cB
5 3jth-a1-m1-cA 92 88 0.4286 0.4565 0.4773 1.05e-16 3jth-a1-m1-cB_3jth-a1-m1-cA
6 3cuo-a2-m1-cC 95 87 0.3980 0.4105 0.4483 2.14e-16 3cuo-a2-m1-cD_3cuo-a2-m1-cC
7 3jth-a1-m1-cB 88 73 0.3878 0.4318 0.5205 2.36e-16 3jth-a1-m1-cB_3jth-a1-m1-cA
8 3cuo-a2-m1-cD 94 86 0.3878 0.4043 0.4419 3.39e-15 3cuo-a2-m1-cD_3cuo-a2-m1-cC
9 3pqk-a3-m1-cF 99 83 0.2959 0.2929 0.3494 2.54e-12 3pqk-a3-m1-cF_3pqk-a3-m1-cE
10 3pqk-a3-m1-cE 100 83 0.2959 0.2900 0.3494 2.72e-12 3pqk-a3-m1-cF_3pqk-a3-m1-cE
11 6o8l-a1-m2-cA 92 86 0.3061 0.3261 0.3488 8.53e-12 6o8l-a1-m1-cA_6o8l-a1-m2-cA
12 6o8l-a1-m1-cA 92 86 0.3061 0.3261 0.3488 8.53e-12 6o8l-a1-m1-cA_6o8l-a1-m2-cA
13 6jmi-a1-m1-cA 100 80 0.2959 0.2900 0.3625 5.17e-10 6jmi-a1-m1-cD_6jmi-a1-m1-cA
14 7p6f-a3-m3-cDDD 97 73 0.2653 0.2680 0.3562 6.61e-10 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
15 7p6f-a3-m1-cDDD 97 73 0.2653 0.2680 0.3562 6.61e-10 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
16 1r23-a1-m1-cB 97 89 0.3163 0.3196 0.3483 7.15e-09 1r23-a1-m1-cB_1r23-a1-m1-cA
17 1r23-a1-m1-cA 104 79 0.3163 0.2981 0.3924 8.27e-09 1r23-a1-m1-cB_1r23-a1-m1-cA
18 2lkp-a1-m1-cB 119 89 0.3265 0.2689 0.3596 1.08e-08 2lkp-a1-m1-cA_2lkp-a1-m1-cB
19 2lkp-a1-m1-cA 119 89 0.3265 0.2689 0.3596 1.08e-08 2lkp-a1-m1-cA_2lkp-a1-m1-cB
20 2jsc-a1-m1-cA 96 76 0.2551 0.2604 0.3289 5.69e-07 2jsc-a1-m1-cA_2jsc-a1-m1-cB
21 2jsc-a1-m1-cB 97 76 0.2551 0.2577 0.3289 5.93e-07 2jsc-a1-m1-cA_2jsc-a1-m1-cB
22 3gw2-a1-m2-cA 92 70 0.2653 0.2826 0.3714 4.56e-06 3gw2-a1-m1-cA_3gw2-a1-m2-cA
23 3gw2-a1-m1-cA 92 70 0.2653 0.2826 0.3714 4.56e-06 3gw2-a1-m1-cA_3gw2-a1-m2-cA
24 2kjb-a1-m1-cB 95 68 0.2143 0.2211 0.3088 3.65e-05 2kjb-a1-m1-cA_2kjb-a1-m1-cB
25 2kjb-a1-m1-cA 95 68 0.2143 0.2211 0.3088 3.65e-05 2kjb-a1-m1-cA_2kjb-a1-m1-cB
26 1r1v-a3-m2-cA 95 68 0.2143 0.2211 0.3088 3.65e-05 1r1v-a3-m2-cA_1r1v-a3-m2-cB
27 1r1v-a3-m2-cB 96 68 0.2143 0.2188 0.3088 3.67e-05 1r1v-a3-m2-cA_1r1v-a3-m2-cB
28 6cdb-a3-m3-cA 97 68 0.2143 0.2165 0.3088 4.34e-05 6cdb-a3-m4-cB_6cdb-a3-m3-cA
29 6cdb-a3-m4-cB 95 68 0.2143 0.2211 0.3088 4.51e-05 6cdb-a3-m2-cB_6cdb-a3-m4-cB, 6cdb-a3-m4-cB_6cdb-a3-m3-cA
30 6cdb-a3-m2-cB 95 68 0.2143 0.2211 0.3088 4.51e-05 6cdb-a3-m2-cB_6cdb-a3-m4-cB
31 3f6v-a1-m2-cA 96 61 0.2347 0.2396 0.3770 1.38e-04 3f6v-a1-m1-cA_3f6v-a1-m2-cA
32 3f6v-a1-m1-cA 96 61 0.2347 0.2396 0.3770 1.38e-04 3f6v-a1-m1-cA_3f6v-a1-m2-cA
33 6uvu-a1-m1-cB 114 82 0.2347 0.2018 0.2805 0.009 6uvu-a1-m1-cA_6uvu-a1-m1-cB
34 6uvu-a1-m1-cA 111 82 0.2347 0.2072 0.2805 0.009 6uvu-a1-m1-cA_6uvu-a1-m1-cB
35 6jmi-a1-m1-cD 83 57 0.2245 0.2651 0.3860 0.010 6jmi-a1-m1-cD_6jmi-a1-m1-cA
36 3f72-a2-m1-cC 103 74 0.2347 0.2233 0.3108 0.010 3f72-a2-m1-cD_3f72-a2-m1-cC
37 6j0e-a1-m1-cA 124 60 0.2041 0.1613 0.3333 0.017 6j0e-a1-m1-cA_6j0e-a1-m1-cB
38 6j0e-a1-m1-cB 125 60 0.2041 0.1600 0.3333 0.020 6j0e-a1-m1-cA_6j0e-a1-m1-cB
39 3f72-a2-m1-cD 100 74 0.2245 0.2200 0.2973 0.034 3f72-a2-m1-cD_3f72-a2-m1-cC
40 2zkz-a1-m1-cB 82 77 0.2755 0.3293 0.3506 0.089 2zkz-a1-m1-cA_2zkz-a1-m1-cB
41 2zkz-a1-m1-cA 82 77 0.2755 0.3293 0.3506 0.089 2zkz-a1-m1-cA_2zkz-a1-m1-cB
42 3f3x-a1-m2-cA 139 46 0.1633 0.1151 0.3478 1.3 3f3x-a1-m1-cA_3f3x-a1-m2-cA
43 3f3x-a1-m1-cA 139 46 0.1633 0.1151 0.3478 1.3 3f3x-a1-m1-cA_3f3x-a1-m2-cA
44 7txn-a1-m1-cA 104 59 0.1837 0.1731 0.3051 1.9 7txn-a1-m1-cA_7txn-a1-m1-cB
45 3f6o-a2-m2-cA 97 79 0.1531 0.1546 0.1899 2.0 3f6o-a2-m1-cA_3f6o-a2-m2-cA
46 3f6o-a2-m1-cA 97 79 0.1531 0.1546 0.1899 2.0 3f6o-a2-m1-cA_3f6o-a2-m2-cA
47 3f6o-a1-m1-cA 97 79 0.1531 0.1546 0.1899 2.0 3f6o-a1-m1-cB_3f6o-a1-m1-cA
48 7txn-a1-m1-cB 105 59 0.1837 0.1714 0.3051 2.0 7txn-a1-m1-cA_7txn-a1-m1-cB
49 3f6o-a1-m1-cB 91 79 0.1531 0.1648 0.1899 2.3 3f6o-a1-m1-cB_3f6o-a1-m1-cA
50 5ts5-a2-m1-cC 480 72 0.2347 0.0479 0.3194 3.1 5ts5-a2-m1-cD_5ts5-a2-m1-cC
51 5ts5-a2-m1-cD 479 72 0.2347 0.0480 0.3194 3.2 5ts5-a2-m1-cD_5ts5-a2-m1-cC
52 5yk4-a1-m1-cB 767 55 0.1837 0.0235 0.3273 6.5 5yk4-a1-m1-cB_5yk4-a1-m1-cA
53 5yk4-a1-m1-cA 771 55 0.1837 0.0233 0.3273 6.5 5yk4-a1-m1-cB_5yk4-a1-m1-cA
54 1ic8-a1-m1-cA 170 65 0.2041 0.1176 0.3077 7.5 1ic8-a1-m1-cA_1ic8-a1-m1-cB
55 1ic8-a1-m1-cB 173 65 0.2041 0.1156 0.3077 7.5 1ic8-a1-m1-cA_1ic8-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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