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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
MQTAAISWGTTPSIRVYTANGNKITERCYDGSNWYTGAFNQAGDNVSATCWLSGSAVHIR
VYATSGGSTTEWCWDGDGWTRGAYTGL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6zfc-a1-m1-cC 87 87 1.0000 1.0000 1.0000 2.73e-59 6zfc-a1-m1-cB_6zfc-a1-m1-cC
2 6zfc-a1-m1-cB 87 87 1.0000 1.0000 1.0000 2.73e-59 6zfc-a1-m1-cB_6zfc-a1-m1-cC
3 4agi-a2-m1-cB 312 81 0.3678 0.1026 0.3951 1.30e-07 4agi-a2-m1-cA_4agi-a2-m1-cB
4 4agi-a2-m1-cA 312 81 0.3678 0.1026 0.3951 1.30e-07 4agi-a2-m1-cA_4agi-a2-m1-cB
5 5eo8-a1-m2-cA 311 84 0.3563 0.0997 0.3690 1.36e-06 5eo8-a1-m1-cA_5eo8-a1-m2-cA
6 5eo8-a1-m1-cA 311 84 0.3563 0.0997 0.3690 1.36e-06 5eo8-a1-m1-cA_5eo8-a1-m2-cA
7 6trv-a1-m1-cBBB 294 78 0.3678 0.1088 0.4103 1.50e-06 6trv-a1-m1-cAAA_6trv-a1-m1-cBBB
8 6trv-a1-m1-cBBB 294 66 0.3448 0.1020 0.4545 1.25e-04 6trv-a1-m1-cAAA_6trv-a1-m1-cBBB
9 6trv-a1-m1-cAAA 294 78 0.3678 0.1088 0.4103 1.50e-06 6trv-a1-m1-cAAA_6trv-a1-m1-cBBB
10 6trv-a1-m1-cAAA 294 66 0.3448 0.1020 0.4545 1.25e-04 6trv-a1-m1-cAAA_6trv-a1-m1-cBBB
11 6gke-a1-m2-cA 309 98 0.4023 0.1133 0.3571 2.07e-05 6gke-a1-m1-cA_6gke-a1-m2-cA
12 6gke-a1-m2-cA 309 53 0.2644 0.0744 0.4340 2.97e-05 6gke-a1-m1-cA_6gke-a1-m2-cA
13 6gke-a1-m2-cA 309 91 0.3678 0.1036 0.3516 5.59e-04 6gke-a1-m1-cA_6gke-a1-m2-cA
14 6gke-a1-m2-cA 309 90 0.3333 0.0939 0.3222 0.013 6gke-a1-m1-cA_6gke-a1-m2-cA
15 6gke-a1-m2-cA 309 96 0.3333 0.0939 0.3021 0.78 6gke-a1-m1-cA_6gke-a1-m2-cA
16 6gke-a1-m1-cA 309 98 0.4023 0.1133 0.3571 2.07e-05 6gke-a1-m1-cA_6gke-a1-m2-cA
17 6gke-a1-m1-cA 309 53 0.2644 0.0744 0.4340 2.97e-05 6gke-a1-m1-cA_6gke-a1-m2-cA
18 6gke-a1-m1-cA 309 91 0.3678 0.1036 0.3516 5.59e-04 6gke-a1-m1-cA_6gke-a1-m2-cA
19 6gke-a1-m1-cA 309 90 0.3333 0.0939 0.3222 0.013 6gke-a1-m1-cA_6gke-a1-m2-cA
20 6gke-a1-m1-cA 309 96 0.3333 0.0939 0.3021 0.78 6gke-a1-m1-cA_6gke-a1-m2-cA
21 3mi6-a1-m1-cD 719 26 0.1379 0.0167 0.4615 1.9 3mi6-a1-m1-cB_3mi6-a1-m1-cD, 3mi6-a1-m1-cC_3mi6-a1-m1-cD
22 3mi6-a3-m1-cB 712 26 0.1379 0.0169 0.4615 1.9 3mi6-a3-m1-cB_3mi6-a3-m1-cC
23 3mi6-a1-m1-cB 712 26 0.1379 0.0169 0.4615 1.9 3mi6-a1-m1-cB_3mi6-a1-m1-cD
24 3mi6-a3-m1-cC 713 26 0.1379 0.0168 0.4615 1.9 3mi6-a3-m1-cB_3mi6-a3-m1-cC
25 3mi6-a1-m1-cC 713 26 0.1379 0.0168 0.4615 1.9 3mi6-a1-m1-cC_3mi6-a1-m1-cD
26 3t8j-a1-m4-cA 311 33 0.1379 0.0386 0.3636 4.7 3t8j-a1-m1-cA_3t8j-a1-m4-cA, 3t8j-a1-m2-cA_3t8j-a1-m4-cA
27 3t8j-a1-m2-cA 311 33 0.1379 0.0386 0.3636 4.7 3t8j-a1-m2-cA_3t8j-a1-m4-cA
28 3t8j-a1-m1-cA 311 33 0.1379 0.0386 0.3636 4.7 3t8j-a1-m1-cA_3t8j-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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