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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=64)
MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVW
LQYG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3cro-a1-m1-cL 66 64 1.0000 0.9697 1.0000 1.10e-42 3cro-a1-m1-cR_3cro-a1-m1-cL
2 3cro-a1-m1-cR 64 64 1.0000 1.0000 1.0000 1.15e-42 3cro-a1-m1-cR_3cro-a1-m1-cL
3 2cro-a1-m3-cA 65 64 1.0000 0.9846 1.0000 1.17e-42 2cro-a1-m2-cA_2cro-a1-m3-cA
4 2cro-a1-m2-cA 65 64 1.0000 0.9846 1.0000 1.17e-42 2cro-a1-m2-cA_2cro-a1-m3-cA
5 1rpe-a1-m1-cR 63 62 0.5000 0.5079 0.5161 1.77e-15 1rpe-a1-m1-cL_1rpe-a1-m1-cR
6 1rpe-a1-m1-cL 63 62 0.5000 0.5079 0.5161 1.77e-15 1rpe-a1-m1-cL_1rpe-a1-m1-cR
7 7p4a-a1-m2-cA 241 42 0.2656 0.0705 0.4048 0.003 7p4a-a1-m1-cB_7p4a-a1-m2-cA, 7p4a-a1-m2-cB_7p4a-a1-m2-cA
8 7p4a-a1-m1-cA 241 42 0.2656 0.0705 0.4048 0.003 7p4a-a1-m2-cB_7p4a-a1-m1-cA
9 4yp9-a1-m1-cB 342 50 0.2344 0.0439 0.3000 0.16 4yp9-a1-m1-cA_4yp9-a1-m1-cB
10 7p4a-a1-m2-cB 205 28 0.1875 0.0585 0.4286 0.47 7p4a-a1-m2-cB_7p4a-a1-m1-cA, 7p4a-a1-m2-cB_7p4a-a1-m2-cA
11 7p4a-a1-m1-cB 205 28 0.1875 0.0585 0.4286 0.47 7p4a-a1-m1-cB_7p4a-a1-m2-cA
12 4ghj-a1-m1-cA 71 38 0.1875 0.1690 0.3158 0.60 4ghj-a1-m1-cA_4ghj-a1-m1-cB
13 4ghj-a1-m1-cB 74 38 0.1875 0.1622 0.3158 0.74 4ghj-a1-m1-cA_4ghj-a1-m1-cB
14 3zkc-a1-m1-cB 63 55 0.2500 0.2540 0.2909 0.89 3zkc-a1-m1-cA_3zkc-a1-m1-cB
15 3zkc-a1-m1-cA 61 56 0.2500 0.2623 0.2857 0.93 3zkc-a1-m1-cA_3zkc-a1-m1-cB
16 1b0n-a6-m3-cA 103 55 0.2500 0.1553 0.2909 1.2 1b0n-a6-m1-cA_1b0n-a6-m3-cA
17 1b0n-a6-m1-cA 103 55 0.2500 0.1553 0.2909 1.2 1b0n-a6-m1-cA_1b0n-a6-m3-cA
18 1b0n-a5-m2-cA 103 55 0.2500 0.1553 0.2909 1.2 1b0n-a5-m1-cA_1b0n-a5-m2-cA
19 1b0n-a5-m1-cA 103 55 0.2500 0.1553 0.2909 1.2 1b0n-a5-m1-cA_1b0n-a5-m2-cA
20 7ewc-a1-m1-cA 70 33 0.1875 0.1714 0.3636 2.5 7ewc-a1-m1-cB_7ewc-a1-m1-cA
21 7ewc-a1-m1-cB 68 33 0.1875 0.1765 0.3636 2.8 7ewc-a1-m1-cB_7ewc-a1-m1-cA
22 3b7h-a1-m2-cA 76 41 0.2031 0.1711 0.3171 3.0 3b7h-a1-m1-cA_3b7h-a1-m2-cA
23 3b7h-a1-m1-cA 76 41 0.2031 0.1711 0.3171 3.0 3b7h-a1-m1-cA_3b7h-a1-m2-cA
24 6gvb-a2-m1-cD 394 22 0.1719 0.0279 0.5000 3.4 6gvb-a2-m1-cC_6gvb-a2-m1-cD
25 6gvb-a2-m1-cC 394 22 0.1719 0.0279 0.5000 3.4 6gvb-a2-m1-cC_6gvb-a2-m1-cD
26 4nqy-a3-m1-cB 409 56 0.2812 0.0440 0.3214 3.7 4nqy-a3-m1-cA_4nqy-a3-m1-cB
27 4nqy-a3-m1-cA 409 56 0.2812 0.0440 0.3214 3.7 4nqy-a3-m1-cA_4nqy-a3-m1-cB
28 4pu7-a1-m1-cB 64 58 0.2656 0.2656 0.2931 4.0 4pu7-a1-m1-cB_4pu7-a1-m1-cA
29 2p3q-a2-m2-cA 258 41 0.1719 0.0426 0.2683 4.2 2p3q-a2-m1-cA_2p3q-a2-m2-cA
30 2p3q-a2-m1-cA 258 41 0.1719 0.0426 0.2683 4.2 2p3q-a2-m1-cA_2p3q-a2-m2-cA
31 4pu7-a1-m1-cA 71 58 0.2656 0.2394 0.2931 5.1 4pu7-a1-m1-cB_4pu7-a1-m1-cA
32 4fzr-a1-m2-cA 338 45 0.2031 0.0385 0.2889 5.5 4fzr-a1-m1-cA_4fzr-a1-m2-cA
33 4fzr-a1-m1-cA 338 45 0.2031 0.0385 0.2889 5.5 4fzr-a1-m1-cA_4fzr-a1-m2-cA
34 3f6w-a5-m1-cD 80 60 0.2656 0.2125 0.2833 6.3 3f6w-a5-m1-cC_3f6w-a5-m1-cD
35 3f6w-a5-m1-cC 80 60 0.2656 0.2125 0.2833 6.3 3f6w-a5-m1-cC_3f6w-a5-m1-cD
36 3f6w-a3-m3-cD 80 60 0.2656 0.2125 0.2833 6.3 3f6w-a3-m1-cB_3f6w-a3-m3-cD
37 3f6w-a3-m1-cB 80 60 0.2656 0.2125 0.2833 6.3 3f6w-a3-m1-cB_3f6w-a3-m3-cD
38 6wsg-a1-m1-cB 334 36 0.2031 0.0389 0.3611 8.6 6wsg-a1-m1-cA_6wsg-a1-m1-cB
39 4yba-a1-m1-cA 77 37 0.2188 0.1818 0.3784 8.8 4yba-a1-m1-cA_4yba-a1-m1-cB
40 4yba-a1-m1-cB 78 37 0.2188 0.1795 0.3784 9.1 4yba-a1-m1-cA_4yba-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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