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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
MQYKLILCGKTLKGETTTEAVDAATAECVFKQYANDNGVDGEWTYDDATKTFTVTE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3v3x-a2-m1-cD 56 56 1.0000 1.0000 1.0000 8.56e-36 3v3x-a2-m1-cB_3v3x-a2-m1-cD
2 3v3x-a2-m1-cB 56 56 1.0000 1.0000 1.0000 8.56e-36 3v3x-a2-m1-cB_3v3x-a2-m1-cD
3 2kwd-a1-m1-cE 56 56 0.9643 0.9643 0.9643 3.85e-33 2kwd-a1-m1-cA_2kwd-a1-m1-cE
4 2kwd-a1-m1-cC 56 56 0.9643 0.9643 0.9643 3.85e-33 2kwd-a1-m1-cA_2kwd-a1-m1-cC
5 2kwd-a1-m1-cA 56 56 0.9643 0.9643 0.9643 3.85e-33 2kwd-a1-m1-cA_2kwd-a1-m1-cC, 2kwd-a1-m1-cA_2kwd-a1-m1-cE
6 3mp9-a3-m2-cB 61 54 0.9286 0.8525 0.9630 1.55e-31 3mp9-a3-m1-cA_3mp9-a3-m2-cB
7 3mp9-a3-m1-cA 61 54 0.9286 0.8525 0.9630 1.55e-31 3mp9-a3-m1-cA_3mp9-a3-m2-cB
8 1q10-a1-m1-cB 56 56 0.8929 0.8929 0.8929 5.25e-30 1q10-a1-m1-cA_1q10-a1-m1-cB
9 1q10-a1-m1-cA 56 56 0.8929 0.8929 0.8929 5.25e-30 1q10-a1-m1-cA_1q10-a1-m1-cB
10 3fil-a1-m1-cB 56 56 0.8929 0.8929 0.8929 3.52e-29 3fil-a1-m1-cA_3fil-a1-m1-cB
11 1mpe-a1-m1-cD 56 56 0.8750 0.8750 0.8750 4.73e-29 1mpe-a1-m1-cA_1mpe-a1-m1-cD, 1mpe-a1-m1-cB_1mpe-a1-m1-cD, 1mpe-a1-m1-cC_1mpe-a1-m1-cD
12 1mpe-a1-m1-cC 56 56 0.8750 0.8750 0.8750 4.73e-29 1mpe-a1-m1-cC_1mpe-a1-m1-cD
13 1mpe-a1-m1-cB 56 56 0.8750 0.8750 0.8750 4.73e-29 1mpe-a1-m1-cB_1mpe-a1-m1-cD
14 1mpe-a1-m1-cA 56 56 0.8750 0.8750 0.8750 4.73e-29 1mpe-a1-m1-cA_1mpe-a1-m1-cD
15 3fil-a1-m1-cA 55 55 0.8750 0.8909 0.8909 3.37e-28 3fil-a1-m1-cA_3fil-a1-m1-cB
16 6f5n-a1-m1-cB 56 56 0.8036 0.8036 0.8036 1.03e-26 6f5n-a1-m1-cA_6f5n-a1-m1-cB
17 6f5n-a1-m1-cA 56 56 0.8036 0.8036 0.8036 1.03e-26 6f5n-a1-m1-cA_6f5n-a1-m1-cB
18 6nla-a1-m2-cA 56 56 0.8214 0.8214 0.8214 1.19e-25 6nla-a1-m1-cA_6nla-a1-m2-cA
19 6nla-a1-m1-cA 56 56 0.8214 0.8214 0.8214 1.19e-25 6nla-a1-m1-cA_6nla-a1-m2-cA
20 1xfb-a3-m1-cL 342 30 0.1964 0.0322 0.3667 4.2 1xfb-a3-m1-cI_1xfb-a3-m1-cL, 1xfb-a3-m1-cK_1xfb-a3-m1-cL
21 1xfb-a3-m1-cK 342 30 0.1964 0.0322 0.3667 4.2 1xfb-a3-m1-cK_1xfb-a3-m1-cL
22 1xfb-a3-m1-cI 342 30 0.1964 0.0322 0.3667 4.2 1xfb-a3-m1-cI_1xfb-a3-m1-cL
23 6eg7-a1-m1-cA 279 37 0.2679 0.0538 0.4054 5.7 6eg7-a1-m1-cB_6eg7-a1-m1-cA
24 6mag-a3-m3-cC 282 37 0.2679 0.0532 0.4054 6.0 6mag-a3-m1-cC_6mag-a3-m3-cC
25 6mag-a3-m1-cC 282 37 0.2679 0.0532 0.4054 6.0 6mag-a3-m1-cC_6mag-a3-m3-cC
26 6eg7-a1-m1-cB 276 37 0.2679 0.0543 0.4054 6.3 6eg7-a1-m1-cB_6eg7-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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