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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2kwd-a1-m1-cE 56 56 1.0000 1.0000 1.0000 4.50e-35 2kwd-a1-m1-cA_2kwd-a1-m1-cE
2 2kwd-a1-m1-cC 56 56 1.0000 1.0000 1.0000 4.50e-35 2kwd-a1-m1-cA_2kwd-a1-m1-cC
3 2kwd-a1-m1-cA 56 56 1.0000 1.0000 1.0000 4.50e-35 2kwd-a1-m1-cA_2kwd-a1-m1-cC, 2kwd-a1-m1-cA_2kwd-a1-m1-cE
4 3mp9-a3-m2-cB 61 54 0.9643 0.8852 1.0000 2.12e-33 3mp9-a3-m1-cA_3mp9-a3-m2-cB
5 3mp9-a3-m1-cA 61 54 0.9643 0.8852 1.0000 2.12e-33 3mp9-a3-m1-cA_3mp9-a3-m2-cB
6 3v3x-a2-m1-cD 56 56 0.9643 0.9643 0.9643 3.85e-33 3v3x-a2-m1-cB_3v3x-a2-m1-cD
7 3v3x-a2-m1-cB 56 56 0.9643 0.9643 0.9643 3.85e-33 3v3x-a2-m1-cB_3v3x-a2-m1-cD
8 1q10-a1-m1-cB 56 56 0.9286 0.9286 0.9286 6.01e-32 1q10-a1-m1-cA_1q10-a1-m1-cB
9 1q10-a1-m1-cA 56 56 0.9286 0.9286 0.9286 6.01e-32 1q10-a1-m1-cA_1q10-a1-m1-cB
10 3fil-a1-m1-cB 56 56 0.9286 0.9286 0.9286 2.20e-31 3fil-a1-m1-cA_3fil-a1-m1-cB
11 1mpe-a1-m1-cD 56 56 0.9107 0.9107 0.9107 5.29e-31 1mpe-a1-m1-cA_1mpe-a1-m1-cD, 1mpe-a1-m1-cB_1mpe-a1-m1-cD, 1mpe-a1-m1-cC_1mpe-a1-m1-cD
12 1mpe-a1-m1-cC 56 56 0.9107 0.9107 0.9107 5.29e-31 1mpe-a1-m1-cC_1mpe-a1-m1-cD
13 1mpe-a1-m1-cB 56 56 0.9107 0.9107 0.9107 5.29e-31 1mpe-a1-m1-cB_1mpe-a1-m1-cD
14 1mpe-a1-m1-cA 56 56 0.9107 0.9107 0.9107 5.29e-31 1mpe-a1-m1-cA_1mpe-a1-m1-cD
15 3fil-a1-m1-cA 55 55 0.9107 0.9273 0.9273 2.59e-30 3fil-a1-m1-cA_3fil-a1-m1-cB
16 6f5n-a1-m1-cB 56 56 0.8393 0.8393 0.8393 9.98e-29 6f5n-a1-m1-cA_6f5n-a1-m1-cB
17 6f5n-a1-m1-cA 56 56 0.8393 0.8393 0.8393 9.98e-29 6f5n-a1-m1-cA_6f5n-a1-m1-cB
18 6nla-a1-m2-cA 56 56 0.8571 0.8571 0.8571 1.06e-27 6nla-a1-m1-cA_6nla-a1-m2-cA
19 6nla-a1-m1-cA 56 56 0.8571 0.8571 0.8571 1.06e-27 6nla-a1-m1-cA_6nla-a1-m2-cA
20 4jot-a1-m3-cA 249 24 0.2321 0.0522 0.5417 2.2 4jot-a1-m2-cA_4jot-a1-m3-cA
21 4jot-a1-m2-cA 249 24 0.2321 0.0522 0.5417 2.2 4jot-a1-m2-cA_4jot-a1-m3-cA
22 6dft-a3-m1-cJ 316 23 0.1607 0.0285 0.3913 3.3 6dft-a3-m1-cJ_6dft-a3-m1-cL
23 6dft-a3-m1-cL 317 23 0.1607 0.0284 0.3913 3.3 6dft-a3-m1-cJ_6dft-a3-m1-cL
24 6t6q-a1-m1-cAAA 209 42 0.3214 0.0861 0.4286 4.5 6t6q-a1-m1-cBBB_6t6q-a1-m1-cAAA
25 6t6q-a1-m1-cBBB 207 42 0.3214 0.0870 0.4286 4.6 6t6q-a1-m1-cBBB_6t6q-a1-m1-cAAA
26 6t69-a1-m2-cA 205 42 0.3214 0.0878 0.4286 4.8 6t69-a1-m1-cA_6t69-a1-m2-cA
27 6t69-a1-m1-cA 205 42 0.3214 0.0878 0.4286 4.8 6t69-a1-m1-cA_6t69-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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