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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
MQYKVILNGKTLKGETTTEAVDAATAEKVVKQFFNDNGVDGEWTYDDATKTFTVTE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1q10-a1-m1-cB 56 56 1.0000 1.0000 1.0000 6.98e-35 1q10-a1-m1-cA_1q10-a1-m1-cB
2 1q10-a1-m1-cA 56 56 1.0000 1.0000 1.0000 6.98e-35 1q10-a1-m1-cA_1q10-a1-m1-cB
3 1mpe-a1-m1-cD 56 56 0.9821 0.9821 0.9821 9.44e-34 1mpe-a1-m1-cA_1mpe-a1-m1-cD, 1mpe-a1-m1-cB_1mpe-a1-m1-cD, 1mpe-a1-m1-cC_1mpe-a1-m1-cD
4 1mpe-a1-m1-cC 56 56 0.9821 0.9821 0.9821 9.44e-34 1mpe-a1-m1-cC_1mpe-a1-m1-cD
5 1mpe-a1-m1-cB 56 56 0.9821 0.9821 0.9821 9.44e-34 1mpe-a1-m1-cB_1mpe-a1-m1-cD
6 1mpe-a1-m1-cA 56 56 0.9821 0.9821 0.9821 9.44e-34 1mpe-a1-m1-cA_1mpe-a1-m1-cD
7 2kwd-a1-m1-cE 56 56 0.9286 0.9286 0.9286 6.01e-32 2kwd-a1-m1-cA_2kwd-a1-m1-cE
8 2kwd-a1-m1-cC 56 56 0.9286 0.9286 0.9286 6.01e-32 2kwd-a1-m1-cA_2kwd-a1-m1-cC
9 2kwd-a1-m1-cA 56 56 0.9286 0.9286 0.9286 6.01e-32 2kwd-a1-m1-cA_2kwd-a1-m1-cC, 2kwd-a1-m1-cA_2kwd-a1-m1-cE
10 3mp9-a3-m2-cB 61 54 0.8929 0.8197 0.9259 2.53e-30 3mp9-a3-m1-cA_3mp9-a3-m2-cB
11 3mp9-a3-m1-cA 61 54 0.8929 0.8197 0.9259 2.53e-30 3mp9-a3-m1-cA_3mp9-a3-m2-cB
12 3v3x-a2-m1-cD 56 56 0.8929 0.8929 0.8929 5.25e-30 3v3x-a2-m1-cB_3v3x-a2-m1-cD
13 3v3x-a2-m1-cB 56 56 0.8929 0.8929 0.8929 5.25e-30 3v3x-a2-m1-cB_3v3x-a2-m1-cD
14 3fil-a1-m1-cB 56 56 0.8571 0.8571 0.8571 3.69e-28 3fil-a1-m1-cA_3fil-a1-m1-cB
15 3fil-a1-m1-cA 55 55 0.8393 0.8545 0.8545 4.41e-27 3fil-a1-m1-cA_3fil-a1-m1-cB
16 6f5n-a1-m1-cB 56 56 0.7679 0.7679 0.7679 3.10e-25 6f5n-a1-m1-cA_6f5n-a1-m1-cB
17 6f5n-a1-m1-cA 56 56 0.7679 0.7679 0.7679 3.10e-25 6f5n-a1-m1-cA_6f5n-a1-m1-cB
18 6nla-a1-m2-cA 56 56 0.8036 0.8036 0.8036 1.28e-24 6nla-a1-m1-cA_6nla-a1-m2-cA
19 6nla-a1-m1-cA 56 56 0.8036 0.8036 0.8036 1.28e-24 6nla-a1-m1-cA_6nla-a1-m2-cA
20 6dft-a3-m1-cJ 316 23 0.1786 0.0316 0.4348 0.40 6dft-a3-m1-cJ_6dft-a3-m1-cL
21 6dft-a3-m1-cL 317 23 0.1786 0.0315 0.4348 0.40 6dft-a3-m1-cJ_6dft-a3-m1-cL
22 4jot-a1-m3-cA 249 24 0.2143 0.0482 0.5000 4.9 4jot-a1-m2-cA_4jot-a1-m3-cA
23 4jot-a1-m2-cA 249 24 0.2143 0.0482 0.5000 4.9 4jot-a1-m2-cA_4jot-a1-m3-cA

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Reference:
Jacob Schwartz et al.

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