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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=56)
MQYKVILNGKTLKGETTTEAVDAATFEKVVKQFFNDNGVDGEWTYDDATKTFTVTE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1mpe-a1-m1-cD 56 56 1.0000 1.0000 1.0000 7.06e-35 1mpe-a1-m1-cA_1mpe-a1-m1-cD, 1mpe-a1-m1-cB_1mpe-a1-m1-cD, 1mpe-a1-m1-cC_1mpe-a1-m1-cD
2 1mpe-a1-m1-cC 56 56 1.0000 1.0000 1.0000 7.06e-35 1mpe-a1-m1-cC_1mpe-a1-m1-cD
3 1mpe-a1-m1-cB 56 56 1.0000 1.0000 1.0000 7.06e-35 1mpe-a1-m1-cB_1mpe-a1-m1-cD
4 1mpe-a1-m1-cA 56 56 1.0000 1.0000 1.0000 7.06e-35 1mpe-a1-m1-cA_1mpe-a1-m1-cD
5 1q10-a1-m1-cB 56 56 0.9821 0.9821 0.9821 9.44e-34 1q10-a1-m1-cA_1q10-a1-m1-cB
6 1q10-a1-m1-cA 56 56 0.9821 0.9821 0.9821 9.44e-34 1q10-a1-m1-cA_1q10-a1-m1-cB
7 2kwd-a1-m1-cE 56 56 0.9107 0.9107 0.9107 5.29e-31 2kwd-a1-m1-cA_2kwd-a1-m1-cE
8 2kwd-a1-m1-cC 56 56 0.9107 0.9107 0.9107 5.29e-31 2kwd-a1-m1-cA_2kwd-a1-m1-cC
9 2kwd-a1-m1-cA 56 56 0.9107 0.9107 0.9107 5.29e-31 2kwd-a1-m1-cA_2kwd-a1-m1-cC, 2kwd-a1-m1-cA_2kwd-a1-m1-cE
10 3mp9-a3-m2-cB 61 54 0.8750 0.8033 0.9074 2.38e-29 3mp9-a3-m1-cA_3mp9-a3-m2-cB
11 3mp9-a3-m1-cA 61 54 0.8750 0.8033 0.9074 2.38e-29 3mp9-a3-m1-cA_3mp9-a3-m2-cB
12 3v3x-a2-m1-cD 56 56 0.8750 0.8750 0.8750 4.73e-29 3v3x-a2-m1-cB_3v3x-a2-m1-cD
13 3v3x-a2-m1-cB 56 56 0.8750 0.8750 0.8750 4.73e-29 3v3x-a2-m1-cB_3v3x-a2-m1-cD
14 3fil-a1-m1-cB 56 56 0.8393 0.8393 0.8393 3.87e-27 3fil-a1-m1-cA_3fil-a1-m1-cB
15 3fil-a1-m1-cA 55 55 0.8214 0.8364 0.8364 4.47e-26 3fil-a1-m1-cA_3fil-a1-m1-cB
16 6f5n-a1-m1-cB 56 56 0.7500 0.7500 0.7500 4.47e-24 6f5n-a1-m1-cA_6f5n-a1-m1-cB
17 6f5n-a1-m1-cA 56 56 0.7500 0.7500 0.7500 4.47e-24 6f5n-a1-m1-cA_6f5n-a1-m1-cB
18 6nla-a1-m2-cA 56 56 0.7857 0.7857 0.7857 1.33e-23 6nla-a1-m1-cA_6nla-a1-m2-cA
19 6nla-a1-m1-cA 56 56 0.7857 0.7857 0.7857 1.33e-23 6nla-a1-m1-cA_6nla-a1-m2-cA
20 6dft-a3-m1-cJ 316 23 0.1607 0.0285 0.3913 3.3 6dft-a3-m1-cJ_6dft-a3-m1-cL
21 6dft-a3-m1-cL 317 23 0.1607 0.0284 0.3913 3.3 6dft-a3-m1-cJ_6dft-a3-m1-cL
22 4myb-a1-m2-cA 217 38 0.2143 0.0553 0.3158 6.7 4myb-a1-m1-cA_4myb-a1-m2-cA
23 4myb-a1-m1-cA 217 38 0.2143 0.0553 0.3158 6.7 4myb-a1-m1-cA_4myb-a1-m2-cA
24 6cn7-a3-m1-cE 539 36 0.1964 0.0204 0.3056 7.3 6cn7-a3-m1-cE_6cn7-a3-m1-cF
25 6cn7-a3-m1-cF 540 36 0.1964 0.0204 0.3056 7.3 6cn7-a3-m1-cE_6cn7-a3-m1-cF
26 3nfw-a2-m1-cC 181 17 0.1607 0.0497 0.5294 7.3 3nfw-a2-m1-cC_3nfw-a2-m1-cD
27 3nfw-a2-m1-cD 182 17 0.1607 0.0495 0.5294 7.3 3nfw-a2-m1-cC_3nfw-a2-m1-cD
28 1c4z-a1-m1-cB 350 27 0.2143 0.0343 0.4444 8.7 1c4z-a1-m1-cA_1c4z-a1-m1-cB
29 1c4z-a1-m1-cA 350 27 0.2143 0.0343 0.4444 8.7 1c4z-a1-m1-cA_1c4z-a1-m1-cB
30 4ov2-a6-m1-cB 163 14 0.1607 0.0552 0.6429 9.6 4ov2-a6-m1-cC_4ov2-a6-m1-cB
31 4ov2-a6-m1-cC 156 14 0.1607 0.0577 0.6429 9.9 4ov2-a6-m1-cC_4ov2-a6-m1-cB

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Reference:
Jacob Schwartz et al.

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