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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
MRKVVAEVSIIPLGKGASVSKYVKKAIEVFKKYDLKVETNAMGTVLEGDLDEILKAFKEA
HSTVLNDVDRVVSSLKIDERKDKENTIERKLKAIGE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2eky-a2-m1-cH 96 96 1.0000 1.0000 1.0000 2.08e-63 2eky-a2-m1-cG_2eky-a2-m1-cH
2 2eky-a2-m1-cG 96 96 1.0000 1.0000 1.0000 2.08e-63 2eky-a2-m1-cG_2eky-a2-m1-cE, 2eky-a2-m1-cG_2eky-a2-m1-cH
3 2eky-a1-m1-cB 100 96 1.0000 0.9600 1.0000 2.09e-63 2eky-a1-m1-cC_2eky-a1-m1-cB
4 2eky-a1-m1-cC 99 96 1.0000 0.9697 1.0000 2.34e-63 2eky-a1-m1-cC_2eky-a1-m1-cB
5 2eky-a2-m1-cE 98 96 1.0000 0.9796 1.0000 2.47e-63 2eky-a2-m1-cG_2eky-a2-m1-cE
6 1lxn-a6-m2-cC 96 96 0.4271 0.4271 0.4271 2.79e-15 1lxn-a6-m2-cB_1lxn-a6-m2-cC
7 1lxn-a6-m2-cB 96 96 0.4271 0.4271 0.4271 2.79e-15 1lxn-a6-m1-cA_1lxn-a6-m2-cB, 1lxn-a6-m2-cB_1lxn-a6-m2-cC
8 1lxn-a6-m1-cA 96 96 0.4271 0.4271 0.4271 2.79e-15 1lxn-a6-m1-cA_1lxn-a6-m2-cB
9 1lxn-a5-m1-cD 96 96 0.4271 0.4271 0.4271 2.79e-15 1lxn-a5-m1-cB_1lxn-a5-m1-cD, 1lxn-a5-m1-cC_1lxn-a5-m1-cD
10 1lxn-a5-m1-cC 96 96 0.4271 0.4271 0.4271 2.79e-15 1lxn-a5-m1-cC_1lxn-a5-m1-cD
11 1lxn-a5-m1-cB 96 96 0.4271 0.4271 0.4271 2.79e-15 1lxn-a5-m1-cB_1lxn-a5-m1-cD
12 1yqh-a1-m2-cB 98 88 0.3125 0.3061 0.3409 1.31e-06 1yqh-a1-m1-cB_1yqh-a1-m2-cB, 1yqh-a1-m2-cB_1yqh-a1-m2-cA
13 1yqh-a1-m1-cB 98 88 0.3125 0.3061 0.3409 1.31e-06 1yqh-a1-m1-cB_1yqh-a1-m2-cB
14 1yqh-a1-m2-cA 101 88 0.3125 0.2970 0.3409 1.33e-06 1yqh-a1-m2-cB_1yqh-a1-m2-cA
15 1lxj-a1-m4-cA 101 91 0.2188 0.2079 0.2308 0.56 1lxj-a1-m1-cA_1lxj-a1-m4-cA, 1lxj-a1-m2-cA_1lxj-a1-m4-cA, 1lxj-a1-m3-cA_1lxj-a1-m4-cA
16 1lxj-a1-m3-cA 101 91 0.2188 0.2079 0.2308 0.56 1lxj-a1-m3-cA_1lxj-a1-m4-cA
17 1lxj-a1-m2-cA 101 91 0.2188 0.2079 0.2308 0.56 1lxj-a1-m2-cA_1lxj-a1-m4-cA
18 1lxj-a1-m1-cA 101 91 0.2188 0.2079 0.2308 0.56 1lxj-a1-m1-cA_1lxj-a1-m4-cA
19 3zvk-a1-m1-cH 57 31 0.1354 0.2281 0.4194 2.7 3zvk-a1-m1-cE_3zvk-a1-m1-cH
20 3zvk-a1-m1-cE 57 31 0.1354 0.2281 0.4194 2.7 3zvk-a1-m1-cE_3zvk-a1-m1-cH
21 2xci-a2-m1-cD 352 54 0.2083 0.0568 0.3704 3.3 2xci-a2-m1-cB_2xci-a2-m1-cD
22 2xci-a2-m1-cB 352 54 0.2083 0.0568 0.3704 3.3 2xci-a2-m1-cB_2xci-a2-m1-cD
23 6rla-a1-m1-cB 2750 31 0.1354 0.0047 0.4194 3.6 6rla-a1-m1-cA_6rla-a1-m1-cB
24 6rla-a1-m1-cA 2750 31 0.1354 0.0047 0.4194 3.6 6rla-a1-m1-cA_6rla-a1-m1-cB
25 2sas-a1-m2-cA 185 52 0.1458 0.0757 0.2692 4.5 2sas-a1-m1-cA_2sas-a1-m2-cA
26 2sas-a1-m1-cA 185 52 0.1458 0.0757 0.2692 4.5 2sas-a1-m1-cA_2sas-a1-m2-cA
27 6nyy-a1-m1-cD 491 28 0.1250 0.0244 0.4286 4.7 6nyy-a1-m1-cC_6nyy-a1-m1-cD
28 6nyy-a1-m1-cC 491 28 0.1250 0.0244 0.4286 4.7 6nyy-a1-m1-cC_6nyy-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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